org.jmol.jvxl.readers
Class SurfaceFileReader
java.lang.Object
org.jmol.jvxl.readers.SurfaceReader
org.jmol.jvxl.readers.SurfaceFileReader
- All Implemented Interfaces:
- VertexDataServer
- Direct Known Subclasses:
- PolygonFileReader, VolumeFileReader
abstract class SurfaceFileReader
- extends SurfaceReader
Fields inherited from class org.jmol.jvxl.readers.SurfaceReader |
allowSigma, ANGSTROMS_PER_BOHR, anisotropy, center, cJvxlEdgeNaN, colorFractionBase, colorFractionRange, contourVertexCount, dataMax, dataMean, dataMin, defaultCutoff, defaultMappedDataMax, defaultMappedDataMin, eccentricityMatrix, eccentricityMatrixInverse, eccentricityRatio, eccentricityScale, edgeFractionBase, edgeFractionRange, fractionData, hasColorData, isAnisotropic, isEccentric, isJvxl, isProgressive, isXLowToHigh, jvxlColorDataRead, jvxlCutoff, jvxlData, jvxlDataIs2dContour, jvxlDataIsColorMapped, jvxlDataIsPrecisionColor, jvxlEdgeDataRead, jvxlFileHeaderBuffer, jvxlNSurfaceInts, jvxlVoxelBitSet, mappingPlane, marchingSquares, meshData, meshDataServer, minMax, nBytes, nDataPoints, nPointsX, nPointsY, nPointsZ, params, ptTemp, sg, vertexDataOnly, volumeData, volumetricOrigin, volumetricVectors, voxelCounts, voxelData, xyzMax, xyzMin |
Methods inherited from class org.jmol.jvxl.readers.SurfaceReader |
addTriangleCheck, addVertexCopy, applyColorScale, colorIsosurface, createIsosurface, excludeMaximumSet, excludeMinimumSet, finalizeMapping, getColorPhaseIndex, getMinMaxMappedValues, getPlane, getSurfacePointAndFraction, getSurfacePointIndexAndFraction, getValue, getValueAtPoint, gotoAndReadVoxelData, gotoData, initializeMapping, initializeVolumetricData, jvxlUpdateInfo, readAndSetVolumeParameters, readColorData, readSurfaceData, readTheVolumeData, readVolumeData, readVolumeParameters, resetIsosurface, selectPocket, setBoundingBox, setMappingPlane, setVectorAnisotropy, setVertexAnisotropy, setVolumeData, setVolumetricAnisotropy, setVolumetricOriginAnisotropy, slabIsosurface, updateSurfaceData, updateTriangles |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
br
protected BufferedReader br
binarydoc
protected BinaryDocument binarydoc
os
protected OutputStream os
line
protected String line
next
protected int[] next
SurfaceFileReader
SurfaceFileReader(SurfaceGenerator sg,
BufferedReader br)
setOutputStream
protected void setOutputStream(OutputStream os)
- Overrides:
setOutputStream
in class SurfaceReader
closeReader
protected void closeReader()
- Specified by:
closeReader
in class SurfaceReader
discardTempData
void discardTempData(boolean discardAll)
- Overrides:
discardTempData
in class SurfaceReader
getTokens
protected String[] getTokens()
parseFloat
protected float parseFloat()
parseFloat
protected float parseFloat(String s)
parseInt
protected int parseInt()
parseInt
protected int parseInt(String s)
parseIntNext
protected int parseIntNext(String s)
parseFloatArray
protected float[] parseFloatArray(String s)
parseFloatArray
protected float[] parseFloatArray()
getNextQuotedString
protected String getNextQuotedString()
skipTo
protected void skipTo(String info,
String what)
throws Exception
- Throws:
Exception
readLine
protected String readLine()
throws Exception
- Throws:
Exception