org.jmol.jvxl.readers
Class Dsn6BinaryReader
java.lang.Object
org.jmol.jvxl.readers.SurfaceReader
org.jmol.jvxl.readers.SurfaceFileReader
org.jmol.jvxl.readers.VolumeFileReader
org.jmol.jvxl.readers.MapFileReader
org.jmol.jvxl.readers.Dsn6BinaryReader
- All Implemented Interfaces:
- VertexDataServer
class Dsn6BinaryReader
- extends MapFileReader
Fields inherited from class org.jmol.jvxl.readers.MapFileReader |
a, adjustment, alpha, b, beta, c, dmax, dmean, dmin, drange, gamma, mapc, mapr, maps, mode, na, nb, nc, nx, nxyzStart, ny, nz, origin, vectors |
Fields inherited from class org.jmol.jvxl.readers.SurfaceReader |
allowSigma, ANGSTROMS_PER_BOHR, anisotropy, center, cJvxlEdgeNaN, colorFractionBase, colorFractionRange, contourVertexCount, dataMax, dataMean, dataMin, defaultCutoff, defaultMappedDataMax, defaultMappedDataMin, eccentricityMatrix, eccentricityMatrixInverse, eccentricityRatio, eccentricityScale, edgeFractionBase, edgeFractionRange, fractionData, hasColorData, isAnisotropic, isEccentric, isJvxl, isProgressive, isXLowToHigh, jvxlColorDataRead, jvxlCutoff, jvxlData, jvxlDataIs2dContour, jvxlDataIsColorMapped, jvxlDataIsPrecisionColor, jvxlEdgeDataRead, jvxlFileHeaderBuffer, jvxlNSurfaceInts, jvxlVoxelBitSet, mappingPlane, marchingSquares, meshData, meshDataServer, minMax, nBytes, nDataPoints, nPointsX, nPointsY, nPointsZ, params, ptTemp, sg, vertexDataOnly, volumeData, volumetricOrigin, volumetricVectors, voxelCounts, voxelData, xyzMax, xyzMin |
Methods inherited from class org.jmol.jvxl.readers.VolumeFileReader |
checkAtomLine, closeReader, getNextVoxelValue, getPlane, getValue, getVoxelBitSet, gotoData, readSurfaceData, readVolumeData, readVolumeParameters, readVoxelVector, recordData, skipComments |
Methods inherited from class org.jmol.jvxl.readers.SurfaceFileReader |
discardTempData, getNextQuotedString, getTokens, parseFloat, parseFloat, parseFloatArray, parseFloatArray, parseInt, parseInt, parseIntNext, readLine, setOutputStream, skipTo |
Methods inherited from class org.jmol.jvxl.readers.SurfaceReader |
addTriangleCheck, addVertexCopy, applyColorScale, colorIsosurface, createIsosurface, excludeMaximumSet, excludeMinimumSet, finalizeMapping, getColorPhaseIndex, getMinMaxMappedValues, getSurfacePointAndFraction, getSurfacePointIndexAndFraction, getValueAtPoint, gotoAndReadVoxelData, initializeMapping, initializeVolumetricData, jvxlUpdateInfo, readAndSetVolumeParameters, readColorData, readTheVolumeData, resetIsosurface, selectPocket, setBoundingBox, setMappingPlane, setVectorAnisotropy, setVertexAnisotropy, setVolumeData, setVolumetricAnisotropy, setVolumetricOriginAnisotropy, slabIsosurface, updateSurfaceData, updateTriangles |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
byteFactor
private float byteFactor
xyCount
private int xyCount
nBrickX
private int nBrickX
nBrickY
private int nBrickY
brickLayerVoxelCount
private int brickLayerVoxelCount
brickLayerByteCount
private int brickLayerByteCount
brickRowByteCount
private int brickRowByteCount
brickLayer
private byte[] brickLayer
pt
private int pt
Dsn6BinaryReader
Dsn6BinaryReader(SurfaceGenerator sg,
String fileName,
String data)
readParameters
protected void readParameters()
throws Exception
- Specified by:
readParameters
in class VolumeFileReader
- Throws:
Exception
readBrickLayer
private void readBrickLayer()
throws Exception
- Throws:
Exception
getBrickValue
private float getBrickValue(int pt)
nextVoxel
protected float nextVoxel()
throws Exception
- Overrides:
nextVoxel
in class VolumeFileReader
- Throws:
Exception
skipData
protected void skipData(int nPoints)
throws Exception
- Overrides:
skipData
in class VolumeFileReader
- Throws:
Exception