org.jmol.api
Interface JmolBioResolver

All Known Implementing Classes:
Resolver

public interface JmolBioResolver


Method Summary
 Polymer buildBioPolymer(Group group, Group[] groups, int i, boolean checkPolymerConnections)
           
 void clearBioPolymers(Group[] groups, int groupCount, BitSet alreadyDefined)
           
 Group distinguishAndPropagateGroup(Chain chain, String group3, int seqcode, int firstAtomIndex, int maxAtomIndex, int modelIndex, int[] specialAtomIndexes, Atom[] atoms)
           
 

Method Detail

distinguishAndPropagateGroup

Group distinguishAndPropagateGroup(Chain chain,
                                   String group3,
                                   int seqcode,
                                   int firstAtomIndex,
                                   int maxAtomIndex,
                                   int modelIndex,
                                   int[] specialAtomIndexes,
                                   Atom[] atoms)

buildBioPolymer

Polymer buildBioPolymer(Group group,
                        Group[] groups,
                        int i,
                        boolean checkPolymerConnections)

clearBioPolymers

void clearBioPolymers(Group[] groups,
                      int groupCount,
                      BitSet alreadyDefined)