org.jmol.modelsetbio
Class AminoPolymer.Bridge

java.lang.Object
  extended by org.jmol.modelsetbio.AminoPolymer.Bridge
Enclosing class:
AminoPolymer

private class AminoPolymer.Bridge
extends Object


Field Summary
protected  Atom a
           
protected  Atom b
           
protected  boolean isAntiparallel
           
protected  int[][] ladder
           
 
Constructor Summary
protected AminoPolymer.Bridge(Atom a, Atom b, Map htLadders)
           
 
Method Summary
protected  boolean addBridge(AminoPolymer.Bridge bridge, Map htLadders)
           
private  void addLadder(Map htLadders)
           
private  boolean canAdd(AminoPolymer.Bridge bridge)
           
private  void extendLadder(int index1, int index2)
           
 String toString()
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
 

Field Detail

a

protected Atom a

b

protected Atom b

ladder

protected int[][] ladder

isAntiparallel

protected boolean isAntiparallel
Constructor Detail

AminoPolymer.Bridge

protected AminoPolymer.Bridge(Atom a,
                              Atom b,
                              Map htLadders)
Method Detail

addLadder

private void addLadder(Map htLadders)

toString

public String toString()
Overrides:
toString in class Object

addBridge

protected boolean addBridge(AminoPolymer.Bridge bridge,
                            Map htLadders)

canAdd

private boolean canAdd(AminoPolymer.Bridge bridge)

extendLadder

private void extendLadder(int index1,
                          int index2)