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java.lang.Objectorg.jmol.jvxl.readers.SurfaceReader
org.jmol.jvxl.readers.SurfaceFileReader
org.jmol.jvxl.readers.VolumeFileReader
org.jmol.jvxl.readers.MapFileReader
org.jmol.jvxl.readers.MrcBinaryReader
class MrcBinaryReader
Field Summary | |
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private static byte[] |
b8
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protected String[] |
labels
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Fields inherited from class org.jmol.jvxl.readers.MapFileReader |
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a, adjustment, alpha, b, beta, c, dmax, dmean, dmin, drange, gamma, mapc, mapr, maps, mode, na, nb, nc, nx, nxyzStart, ny, nz, origin, vectors |
Fields inherited from class org.jmol.jvxl.readers.VolumeFileReader |
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atomCount, boundingBox, canDownsample, endOfData, isAngstroms, negativeAtomCount, nSurfaces, readerClosed, thePlane |
Fields inherited from class org.jmol.jvxl.readers.SurfaceFileReader |
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binarydoc, br, line, next, os |
Constructor Summary | |
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MrcBinaryReader(SurfaceGenerator sg,
String fileName,
String data)
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Method Summary | |
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protected float |
nextVoxel()
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protected void |
readParameters()
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protected void |
skipData(int nPoints)
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Methods inherited from class org.jmol.jvxl.readers.MapFileReader |
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getVectorsAndOrigin, setCutoffAutomatic |
Methods inherited from class org.jmol.jvxl.readers.VolumeFileReader |
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checkAtomLine, closeReader, getNextVoxelValue, getPlane, getValue, getVoxelBitSet, gotoData, readSurfaceData, readVolumeData, readVolumeParameters, readVoxelVector, recordData, skipComments |
Methods inherited from class org.jmol.jvxl.readers.SurfaceFileReader |
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discardTempData, getNextQuotedString, getTokens, parseFloat, parseFloat, parseFloatArray, parseFloatArray, parseInt, parseInt, parseIntNext, readLine, setOutputStream, skipTo |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
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protected String[] labels
private static byte[] b8
Constructor Detail |
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MrcBinaryReader(SurfaceGenerator sg, String fileName, String data)
Method Detail |
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protected void readParameters() throws Exception
readParameters
in class VolumeFileReader
Exception
protected float nextVoxel() throws Exception
nextVoxel
in class VolumeFileReader
Exception
protected void skipData(int nPoints) throws Exception
skipData
in class VolumeFileReader
Exception
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