org.jmol.adapter.readers.xml
Class XmlVaspReader
java.lang.Object
org.jmol.adapter.smarter.AtomSetCollectionReader
org.jmol.adapter.readers.xml.XmlReader
org.jmol.adapter.readers.xml.XmlVaspReader
public class XmlVaspReader
- extends XmlReader
Vasp vasprun.xml reader
- Author:
- hansonr
Fields inherited from class org.jmol.adapter.smarter.AtomSetCollectionReader |
addVibrations, ANGSTROMS_PER_BOHR, applySymmetryToBonds, atomSetCollection, bsFilter, bsModels, calculationType, continuing, desiredModelNumber, desiredVibrationNumber, doApplySymmetry, doCheckUnitCell, doProcessLines, filter, getHeader, haveModel, havePartialChargeFilter, htParams, ignoreFileSpaceGroupName, ignoreFileSymmetryOperators, ignoreFileUnitCell, iHaveSymmetryOperators, iHaveUnitCell, isSequential, isTrajectory, latticeCells, line, matUnitCellOrientation, modelNumber, next, notionalUnitCell, os, prevline, ptLine, reader, readerName, readMolecularOrbitals, spaceGroup, symmetry, templateAtomCount, vibrationNumber, viewer |
Method Summary |
void |
processEndElement(String uri,
String localName,
String qName)
|
void |
processStartElement(String namespaceURI,
String localName,
String qName,
HashMap atts)
|
protected void |
processXml(XmlReader parent,
AtomSetCollection atomSetCollection,
BufferedReader reader,
netscape.javascript.JSObject DOMNode)
|
protected void |
processXml(XmlReader parent,
AtomSetCollection atomSetCollection,
BufferedReader reader,
XMLReader xmlReader)
|
Methods inherited from class org.jmol.adapter.smarter.AtomSetCollectionReader |
addJmolScript, addPrimitiveLatticeVector, addSites, addSiteScript, applySymmetryAndSetTrajectory, checkFilter, checkLastModel, checkLine, checkLineForScript, checkLineForScript, clearLatticeParameters, cloneLastAtomSet, discardLines, discardLinesUntilBlank, discardLinesUntilContains, discardLinesUntilContains, discardLinesUntilNonBlank, discardLinesUntilStartsWith, doGetModel, doGetVibration, fillDataBlock, fillDataBlock, fillFloatArray, fillFrequencyData, filterAtom, finalizeReader, getElementSymbol, getFortranFormatLengths, getStrings, getSymmetry, getTokens, getTokens, getTokens, getTokensFloat, initializeSymmetry, isLastModel, newAtomSet, parseFloat, parseFloat, parseFloat, parseInt, parseInt, parseInt, parseInt, parseStringInfestedFloatArray, parseToken, parseToken, parseToken, parseTokenNext, parseTrimmed, parseTrimmed, readData, readLine, set2D, setAtomCoord, setAtomCoord, setFilter, setFractionalCoordinates, setMOData, setSpaceGroupName, setSymmetryOperator, setTransform, setUnitCell, setUnitCellItem |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
vaspImplementedAttributes
String[] vaspImplementedAttributes
data
StringBuffer data
name
String name
atomCount
int atomCount
iAtom
int iAtom
modelRead
boolean modelRead
readThisModel
boolean readThisModel
haveUnitCell
boolean haveUnitCell
atomNames
String[] atomNames
atomSyms
String[] atomSyms
atomName
String atomName
atomSym
String atomSym
a
float a
b
float b
c
float c
alpha
float alpha
beta
float beta
gamma
float gamma
XmlVaspReader
XmlVaspReader()
processXml
protected void processXml(XmlReader parent,
AtomSetCollection atomSetCollection,
BufferedReader reader,
XMLReader xmlReader)
- Overrides:
processXml
in class XmlReader
processXml
protected void processXml(XmlReader parent,
AtomSetCollection atomSetCollection,
BufferedReader reader,
netscape.javascript.JSObject DOMNode)
- Overrides:
processXml
in class XmlReader
processStartElement
public void processStartElement(String namespaceURI,
String localName,
String qName,
HashMap atts)
- Overrides:
processStartElement
in class XmlReader
processEndElement
public void processEndElement(String uri,
String localName,
String qName)
- Overrides:
processEndElement
in class XmlReader