Package visad.bio

VisBio: a multi-purpose biological analysis tool

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          Description

Interface Summary
PlaneListener Interface for listeners notified when PlaneSelector plane is modified.
 

Class Summary
AlignmentPlane AlignmentPlane maintains an arbitrary plane specifying a spatial alignment in 3-D.
AlignToolPanel AlignToolPanel is the tool panel for managing image alignment, spacing and drift correction.
ArbitrarySlice ArbitrarySlice is a plane selector that specifies an arbitrary slice through a 3-D box.
BioAnimWidget BioAnimWidget is a simple widget for controlling animation.
BioColorWidget BioColorWidget is a widget for controlling mappings from range scalars to color scalars.
BioHelpWindow BioHelpWindow details basic VisBio program usage.
BioSpinWidget BioSpinWidget is a simple widget for controlling animation.
BioStepWidget BioStepWidget is a slider GUI component with directional step arrows at either end, used by VisBio.
BioUtil BioUtil provides a collection of general utilities used by VisBio.
ColorBar ColorBar is a bar of color designed to represent color graphically.
ColorRenderer ColorRenderer is a JComboBox renderer that uses ColorBars.
ColorToolPanel ColorToolPanel is the tool panel for adjusting viewing parameters.
DoubleTextCheckBox A checkbox with two text fields.
ExportDialog ExportDialog provides a set of options for exporting a 4-D data series.
FileSeriesWidget FileSeriesWidget is a GUI component for stepping through data from a series of files.
GroupDialog GroupDialog provides a mechanism for selecting a series of files.
ImageStackWidget ImageStackWidget is a GUI component for stepping through an image stack.
ImportDialog ImportDialog provides a set of options for importing a 4-D data series.
MeasureGroup MeasureGroup represents a possible grouping for measurements.
MeasureLine A connecting line in the list of measurements.
MeasureList MeasureList maintains a list of measurements between points in a field.
MeasureManager MeasureManager is the class encapsulating VisBio's measurement logic.
MeasurePoint An endpoint in the list of measurements.
MeasurePool MeasurePool maintains a pool of manipulable points and a set of connecting lines, for interactive data measurement in the given display.
MeasureThing MeasureThing is the base class for measurement constructs such as lines and points.
MeasureToolPanel MeasureToolPanel is the tool panel for managing measurements between data points.
MultiLUT  
OptionDialog OptionDialog is a dialog of configuring VisBio options.
PlaneSelector PlaneSelector maintains a data structure of three endpoints that can be manipulated by the user to specify an arbitrary plane in 3-D.
PoolPoint PoolPoint is a single measurement pool endpoint.
ProgressDialog ProgressDialog is a modal dialog displaying a progress bar.
QTFileFilter A file filter for finding QTJava.zip, for use with OptionDialog.
SeriesChooser SeriesChooser provides a mechanism for specifying a 4-D data series.
SeriesFileFilter A file filter for identifying data series.
SliceManager SliceManager is the class encapsulating VisBio's slice logic.
StateManager StateManager contains information needed to recreate a VisBio program state, in the case of a program crash or other error.
ToolPanel ToolPanel is the superclass of all tool panel types.
ViewToolPanel ViewToolPanel is the tool panel for adjusting viewing parameters.
VisBio VisBio is a multi-purpose biological analysis tool.
 

Package visad.bio Description

VisBio: a multi-purpose biological analysis tool

VisBio provides multi-dimensional visualization of an image or stack of images across time, arbitrary slicing of the data, and measurement tools.