public interface JmolNode
Modifier and Type | Method and Description |
---|---|
short |
getAtomicAndIsotopeNumber() |
java.lang.String |
getAtomName() |
int |
getAtomSite() |
int |
getBondedAtomIndex(int j) |
char |
getChainID() |
int |
getCovalentBondCount() |
int |
getCovalentHydrogenCount() |
boolean |
getCrossLinkLeadAtomIndexes(java.util.List vReturn) |
JmolEdge[] |
getEdges() |
short |
getElementNumber() |
int |
getFormalCharge() |
java.lang.String |
getGroup1(char c0) |
java.lang.String |
getGroup3(boolean allowNull) |
java.lang.String |
getGroupType() |
int |
getImplicitHydrogenCount() |
int |
getIndex() |
short |
getIsotopeNumber() |
int |
getModelIndex() |
int |
getOffsetResidueAtom(java.lang.String name,
int offset) |
int |
getResno() |
int |
getValence() |
boolean |
isCrossLinked(JmolNode node) |
boolean |
isDeleted() |
boolean |
isDna() |
boolean |
isLeadAtom() |
boolean |
isNucleic() |
boolean |
isProtein() |
boolean |
isPurine() |
boolean |
isPyrimidine() |
boolean |
isRna() |
void |
set(float x,
float y,
float z) |
void |
setGroupBits(java.util.BitSet bs) |
void set(float x, float y, float z)
int getAtomSite()
int getBondedAtomIndex(int j)
int getCovalentHydrogenCount()
JmolEdge[] getEdges()
short getElementNumber()
int getFormalCharge()
int getIndex()
short getIsotopeNumber()
int getModelIndex()
int getValence()
int getCovalentBondCount()
int getImplicitHydrogenCount()
short getAtomicAndIsotopeNumber()
java.lang.String getAtomName()
java.lang.String getGroupType()
java.lang.String getGroup1(char c0)
java.lang.String getGroup3(boolean allowNull)
int getResno()
char getChainID()
int getOffsetResidueAtom(java.lang.String name, int offset)
boolean getCrossLinkLeadAtomIndexes(java.util.List vReturn)
void setGroupBits(java.util.BitSet bs)
boolean isLeadAtom()
boolean isCrossLinked(JmolNode node)
boolean isProtein()
boolean isNucleic()
boolean isDna()
boolean isRna()
boolean isPurine()
boolean isPyrimidine()
boolean isDeleted()