org.biojava.bio.seq.io
Class FastaDescriptionLineParser
java.lang.Object
org.biojava.bio.seq.io.SequenceBuilderFilter
org.biojava.bio.seq.io.FastaDescriptionLineParser
- All Implemented Interfaces:
- SeqIOListener, SequenceBuilder
Deprecated. Use org.biojavax.bio.seq.io.FastaFormat
public class FastaDescriptionLineParser
- extends SequenceBuilderFilter
Simple filter which performs a default extraction of data from
the description lines of FASTA files. Behaviour is similar
to DefaultDescriptionReader in the old I/O framework.
- Since:
- 1.1
- Author:
- Thomas Down
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
FastaDescriptionLineParser
public FastaDescriptionLineParser(SequenceBuilder delegate)
- Deprecated.
addSequenceProperty
public void addSequenceProperty(Object key,
Object value)
throws ParseException
- Deprecated.
- Description copied from interface:
SeqIOListener
- Notify the listener of a sequence-wide property. This might
be stored as an entry in the sequence's annotation bundle.
- Specified by:
addSequenceProperty
in interface SeqIOListener
- Overrides:
addSequenceProperty
in class SequenceBuilderFilter
- Throws:
ParseException