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Packages that use FastqVariant | |
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org.biojava.bio.program.fastq | FASTQ and variants sequence format IO. |
Uses of FastqVariant in org.biojava.bio.program.fastq |
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Fields in org.biojava.bio.program.fastq declared as FastqVariant | |
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static FastqVariant |
FastqBuilder.DEFAULT_VARIANT
Default FASTQ sequence format variant, FastqVariant.FASTQ_SANGER . |
Methods in org.biojava.bio.program.fastq that return FastqVariant | |
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FastqVariant |
Fastq.getVariant()
Return the FASTQ sequence format variant for this FASTQ formatted sequence. |
protected FastqVariant |
IlluminaFastqReader.getVariant()
Return the FASTQ sequence format variant for this reader. |
protected FastqVariant |
SangerFastqReader.getVariant()
Return the FASTQ sequence format variant for this reader. |
protected FastqVariant |
SolexaFastqReader.getVariant()
Return the FASTQ sequence format variant for this reader. |
static FastqVariant |
FastqVariant.parseFastqVariant(String name)
Return the FASTQ sequence format variant with the specified name, if any. |
static FastqVariant |
FastqVariant.valueOf(String name)
Returns the enum constant of this type with the specified name. |
static FastqVariant[] |
FastqVariant.values()
Returns an array containing the constants of this enum type, in the order they are declared. |
Methods in org.biojava.bio.program.fastq with parameters of type FastqVariant | |
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FastqBuilder |
FastqBuilder.withVariant(FastqVariant variant)
Return this FASTQ formatted sequence builder configured with the specified FASTQ sequence format variant. |
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