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Packages that use OrthoPairSet | |
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org.biojava.bio.program.homologene | Support classes for Homologene data. |
Uses of OrthoPairSet in org.biojava.bio.program.homologene |
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Classes in org.biojava.bio.program.homologene that implement OrthoPairSet | |
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class |
AbstractOrthoPairSet
represents the Homologene Group. |
class |
SimpleOrthoPairSet
a no-frills implementation of a Homologene Group |
Methods in org.biojava.bio.program.homologene that return OrthoPairSet | |
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OrthoPairSet |
HomologeneDB.createOrthoPairSet()
Create a Homologene Group. |
OrthoPairSet |
SimpleHomologeneDB.createOrthoPairSet()
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OrthoPairSet |
AbstractOrthoPairSet.filter(OrthoPairFilter filter)
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OrthoPairSet |
OrthoPairSet.filter(OrthoPairFilter filter)
filter an OrthoPairSet |
OrthoPairSet |
OrthoPairCollection.Iterator.nextSet()
returns the next OrthoPairSet |
OrthoPairSet |
SimpleOrthoPairCollection.Iterator.nextSet()
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Methods in org.biojava.bio.program.homologene with parameters of type OrthoPairSet | |
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boolean |
OrthoPairSetFilter.accept(OrthoPairSet group)
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boolean |
OrthoPairSetFilter.AcceptAll.accept(OrthoPairSet group)
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boolean |
OrthoPairSetFilter.Not.accept(OrthoPairSet group)
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boolean |
OrthoPairSetFilter.Or.accept(OrthoPairSet group)
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boolean |
OrthoPairSetFilter.And.accept(OrthoPairSet group)
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boolean |
OrthoPairSetFilter.Xor.accept(OrthoPairSet group)
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boolean |
OrthoPairSetFilter.ByTaxon.accept(OrthoPairSet group)
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boolean |
OrthoPairSetFilter.ByMinIdentity.accept(OrthoPairSet group)
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boolean |
OrthoPairSetFilter.AllPairsInCollection.accept(OrthoPairSet group)
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boolean |
OrthoPairSetFilter.SomePairsInCollection.accept(OrthoPairSet group)
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abstract void |
AbstractOrthoPairCollection.add(OrthoPairSet group)
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void |
OrthoPairCollection.add(OrthoPairSet group)
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void |
SimpleOrthoPairCollection.add(OrthoPairSet group)
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abstract boolean |
AbstractOrthoPairCollection.contains(OrthoPairSet group)
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boolean |
OrthoPairCollection.contains(OrthoPairSet group)
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boolean |
SimpleOrthoPairCollection.contains(OrthoPairSet group)
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