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Packages that use DistributionFactory | |
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org.biojava.bio.dist | Probability distributions over Alphabets. |
org.biojava.bio.dp | HMM and Dynamic Programming Algorithms. |
org.biojava.bio.program.hmmer | Tools for working with profile Hidden Markov Models from the HMMer package. |
Uses of DistributionFactory in org.biojava.bio.dist |
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Classes in org.biojava.bio.dist that implement DistributionFactory | |
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static class |
DistributionFactory.DefaultDistributionFactory
The default DistributionFactory implementation. |
class |
OrderNDistributionFactory
Default factory for Order-N distributions. |
Fields in org.biojava.bio.dist declared as DistributionFactory | |
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static DistributionFactory |
DistributionFactory.DEFAULT
The default DistributionFactory object. |
static DistributionFactory |
OrderNDistributionFactory.DEFAULT
Factory which used DistributionFactory.DEFAULT to create conditioned distributions. |
Constructors in org.biojava.bio.dist with parameters of type DistributionFactory | |
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OrderNDistributionFactory(DistributionFactory df)
Construct a new OrderNDistributionFactory with a specified factory for conditioned distributions. |
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TranslatedDistribution(ReversibleTranslationTable table,
Distribution other,
DistributionFactory distFact)
Create a new TranslatedDistribution. |
Uses of DistributionFactory in org.biojava.bio.dp |
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Constructors in org.biojava.bio.dp with parameters of type DistributionFactory | |
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ProfileHMM(Alphabet alpha,
int columns,
DistributionFactory matchFactory,
DistributionFactory insertFactory)
Deprecated. |
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ProfileHMM(Alphabet alpha,
int columns,
DistributionFactory matchFactory,
DistributionFactory insertFactory,
String name)
Create a new ProfileHMM. |
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SimpleWeightMatrix(Alphabet alpha,
int columns,
DistributionFactory dFact)
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Uses of DistributionFactory in org.biojava.bio.program.hmmer |
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Constructors in org.biojava.bio.program.hmmer with parameters of type DistributionFactory | |
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HmmerProfileHMM(Alphabet alpha,
int columns,
DistributionFactory matchFactory,
DistributionFactory insertFactory,
String name)
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