Uses of Interface
org.biojava.bio.program.ssaha.SearchListener

Packages that use SearchListener
org.biojava.bio.program.ssaha SSAHA sequence searching API. 
 

Uses of SearchListener in org.biojava.bio.program.ssaha
 

Classes in org.biojava.bio.program.ssaha that implement SearchListener
 class HitMerger
          A listener that merges overlapping hits and culls all hits under a given length.
static class SearchListener.Echo
          A SearchListener that prints events out to a PrintStream.
static class SearchListener.FilterByLength
          A simple listener that filters out all hits that are too short.
static class SearchListener.Tee
          A SearchListener that passes events on to two delegate listeners.
static class SearchListener.Wrapper
          A simple wrapper implementation.
 

Methods in org.biojava.bio.program.ssaha with parameters of type SearchListener
 void CompactedDataStore.fireHits(int word, int offset, SearchListener listener)
           
 void CompactedDataStore.search(String seqID, SymbolList symList, SearchListener listener)
           
 void DataStore.search(String id, SymbolList symList, SearchListener listener)
          Search the DataStore with a symbol list.
 

Constructors in org.biojava.bio.program.ssaha with parameters of type SearchListener
HitMerger(SearchListener delegate, int minLength)
          Build a new HitMerger that will pass events on to a delegate.
SearchListener.FilterByLength(SearchListener delegate, int minLength)
           
SearchListener.Tee(SearchListener d1, SearchListener d2)
           
SearchListener.Wrapper(SearchListener delegate)