Uses of Class
org.biojava.bio.program.fastq.FastqVariant

Packages that use FastqVariant
org.biojava.bio.program.fastq FASTQ and variants sequence format IO. 
 

Uses of FastqVariant in org.biojava.bio.program.fastq
 

Fields in org.biojava.bio.program.fastq declared as FastqVariant
static FastqVariant FastqBuilder.DEFAULT_VARIANT
          Default FASTQ sequence format variant, FastqVariant.FASTQ_SANGER.
 

Methods in org.biojava.bio.program.fastq that return FastqVariant
 FastqVariant Fastq.getVariant()
          Return the FASTQ sequence format variant for this FASTQ formatted sequence.
protected  FastqVariant IlluminaFastqReader.getVariant()
          Return the FASTQ sequence format variant for this reader.
protected  FastqVariant SangerFastqReader.getVariant()
          Return the FASTQ sequence format variant for this reader.
protected  FastqVariant SolexaFastqReader.getVariant()
          Return the FASTQ sequence format variant for this reader.
static FastqVariant FastqVariant.parseFastqVariant(String name)
          Return the FASTQ sequence format variant with the specified name, if any.
static FastqVariant FastqVariant.valueOf(String name)
          Returns the enum constant of this type with the specified name.
static FastqVariant[] FastqVariant.values()
          Returns an array containing the constants of this enum type, in the order they are declared.
 

Methods in org.biojava.bio.program.fastq with parameters of type FastqVariant
 FastqBuilder FastqBuilder.withVariant(FastqVariant variant)
          Return this FASTQ formatted sequence builder configured with the specified FASTQ sequence format variant.