Uses of Interface
org.biojavax.bio.seq.io.RichSeqIOListener

Packages that use RichSeqIOListener
org.biojavax.bio.seq.io Classes to support the I/O of RichSequence and Bioentry objects. 
 

Uses of RichSeqIOListener in org.biojavax.bio.seq.io
 

Subinterfaces of RichSeqIOListener in org.biojavax.bio.seq.io
 interface RichSequenceBuilder
          An interface for objects that can build RichSequences.
 

Classes in org.biojavax.bio.seq.io that implement RichSeqIOListener
 class DebuggingRichSeqIOListener
          This is purely for debugging purposes.
 class RichSeqIOAdapter
          This class implements all methods of RichSeqIOListener and takes no action.
 class SimpleRichSequenceBuilder
          Constructs BioEntry objects by listening to events.
 

Methods in org.biojavax.bio.seq.io with parameters of type RichSeqIOListener
 void FastaFormat.processHeader(String line, RichSeqIOListener rsiol, Namespace ns)
          Parse the Header information from the Fasta Description line
 boolean EMBLFormat.readRichSequence(BufferedReader reader, SymbolTokenization symParser, RichSeqIOListener rlistener, Namespace ns)
          Reads a sequence from the given buffered reader using the given tokenizer to parse sequence symbols.
 boolean EMBLxmlFormat.readRichSequence(BufferedReader reader, SymbolTokenization symParser, RichSeqIOListener rlistener, Namespace ns)
          Reads a sequence from the given buffered reader using the given tokenizer to parse sequence symbols.
 boolean FastaFormat.readRichSequence(BufferedReader reader, SymbolTokenization symParser, RichSeqIOListener rsiol, Namespace ns)
          Reads a sequence from the given buffered reader using the given tokenizer to parse sequence symbols.
 boolean GenbankFormat.readRichSequence(BufferedReader reader, SymbolTokenization symParser, RichSeqIOListener rlistener, Namespace ns)
          Reads a sequence from the given buffered reader using the given tokenizer to parse sequence symbols.
 boolean INSDseqFormat.readRichSequence(BufferedReader reader, SymbolTokenization symParser, RichSeqIOListener rlistener, Namespace ns)
          Reads a sequence from the given buffered reader using the given tokenizer to parse sequence symbols.
 boolean RichSequenceFormat.readRichSequence(BufferedReader reader, SymbolTokenization symParser, RichSeqIOListener listener, Namespace ns)
          Reads a sequence from the given buffered reader using the given tokenizer to parse sequence symbols.
 boolean UniProtFormat.readRichSequence(BufferedReader reader, SymbolTokenization symParser, RichSeqIOListener rlistener, Namespace ns)
          Reads a sequence from the given buffered reader using the given tokenizer to parse sequence symbols.
 boolean UniProtXMLFormat.readRichSequence(BufferedReader reader, SymbolTokenization symParser, RichSeqIOListener rlistener, Namespace ns)
          Reads a sequence from the given buffered reader using the given tokenizer to parse sequence symbols.