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Packages that use org.biojava.bio.dp.twohead | |
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org.biojava.bio.dp | HMM and Dynamic Programming Algorithms. |
org.biojava.bio.dp.twohead |
Classes in org.biojava.bio.dp.twohead used by org.biojava.bio.dp | |
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CellCalculatorFactoryMaker
The interface for all functions that can calculate the 'scores' array for a given cell. |
Classes in org.biojava.bio.dp.twohead used by org.biojava.bio.dp.twohead | |
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AbstractMatrixPairDPCursor
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Cell
A single cell in the DP matrix. |
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CellCalculator
The interface for all functions that can calculate the 'scores' array for a given cell. |
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CellCalculatorFactory
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CellCalculatorFactoryMaker
The interface for all functions that can calculate the 'scores' array for a given cell. |
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EmissionCache
Cache for columns of emission probabilities in pair-wise alignment algorithms. |
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PairDPCursor
A cursor over a DP matrix. |
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PairDPMatrix
Storage structure for intermediate values from a pairwise dynamic programming run. |
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