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java.lang.Objectjava.lang.Enum<FastqVariant>
org.biojava.bio.program.fastq.FastqVariant
public enum FastqVariant
FASTQ sequence format variant.
Enum Constant Summary | |
---|---|
FASTQ_ILLUMINA
Illumina FASTQ sequence format variant. |
|
FASTQ_SANGER
Sanger FASTQ sequence format variant. |
|
FASTQ_SOLEXA
Solexa FASTQ sequence format variant. |
Method Summary | |
---|---|
String |
getDescription()
Return the description of this FASTQ sequence format variant. |
boolean |
isIllumina()
Return true if this FASTQ sequence format variant is FASTQ_ILLUMINA . |
boolean |
isSanger()
Return true if this FASTQ sequence format variant is FASTQ_SANGER . |
boolean |
isSolexa()
Return true if this FASTQ sequence format variant is FASTQ_SOLEXA . |
String |
lowercaseName()
Return the name of this FASTQ sequence format variant in lowercase-with-dashes style. |
static FastqVariant |
parseFastqVariant(String name)
Return the FASTQ sequence format variant with the specified name, if any. |
static FastqVariant |
valueOf(String name)
Returns the enum constant of this type with the specified name. |
static FastqVariant[] |
values()
Returns an array containing the constants of this enum type, in the order they are declared. |
Methods inherited from class java.lang.Enum |
---|
clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf |
Methods inherited from class java.lang.Object |
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getClass, notify, notifyAll, wait, wait, wait |
Enum Constant Detail |
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public static final FastqVariant FASTQ_SANGER
public static final FastqVariant FASTQ_SOLEXA
public static final FastqVariant FASTQ_ILLUMINA
Method Detail |
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public static FastqVariant[] values()
for (FastqVariant c : FastqVariant.values()) System.out.println(c);
public static FastqVariant valueOf(String name)
name
- the name of the enum constant to be returned.
IllegalArgumentException
- if this enum type has no constant
with the specified name
NullPointerException
- if the argument is nullpublic String getDescription()
public boolean isSanger()
FASTQ_SANGER
.
FASTQ_SANGER
public boolean isSolexa()
FASTQ_SOLEXA
.
FASTQ_SOLEXA
public boolean isIllumina()
FASTQ_ILLUMINA
.
FASTQ_ILLUMINA
public String lowercaseName()
lowercase-with-dashes
style.
lowercase-with-dashes
stylepublic static FastqVariant parseFastqVariant(String name)
UPPERCASE_WITH_UNDERSCORES
or lowercase-with-dashes
style.
name
- name
null
if no such FASTQ sequence format variant exists
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