Package ssbind

Class Summary
AlignmentBuilder This filter intercepts the querySequence and subjectSequence events to build an alignment.
CountHits Prints out a count of the total number of hits in a report.
CountSubHits Prints out a count of the total number of sub hits in a report.
Echoer Echo the event stream to stdout with prety indenting.
FilterByValue Filter complete sub hits by the numerical value of some property.
ListQueries Lists all query sequence names in the report.
ListSubjects Lists all subject sequence names in the report.
ProcessBlastReport Driver script that parses a blast report and pumps the result through a configurable chain of filters and handlers.
PropertyEchoer Print out the value of a single property.
SubHitBuilder Build SeqSimilaritySearchSubHit instances from the sub hit info.
SubHitFilter Abstract base class for things that will allow or disallow whole sub hit messages through to the next handler.