All Classes

AlignmentBuilder AlignProteins BeadDemo Blast2HTML BlastLike2XML BlastLike2XML BlastParser CircularEmblViewer CircularLocationTester CountHits CountSubHits CreateDNAFastaHashTable CreateDNAFastaHashTableCompact CreateDNAFastaHashTableLarge CreateEmblHashTable CreateEmblHashTableLarge CreateFAIndex CreateIndex CreateIndexDB CreateSPIndex CreateUnigeneFlat Dice DummyFromGFF Echoer EmblToGffFasta EmblViewer EmblViewer2 Fasta2XML FastBeadDemo FetchSeq FilterByValue GappedViewer GCContent GenbankToGffFasta GFFCompare GFFFilter GFFMask GFFToFeatures Grep Index IndexFastaDB LargeSequenceTest ListIDs ListQueries ListSubjects LoadStructure MatrixValue MotifFinder2 PairwiseAlignment Parse ParseEmbl ParseLibInfo ParseSwissprot ParseUnigene PatternDemo PatternFinder Pdb2XML Pdb2XML PDBView PhiPsiCalculation PrintFormat ProcessBlastReport ProcessToolsTest PropertyEchoer ReadFasta ReadFastaX ReadFastaX2 ReadRaw ReadRawSecondary ResultPrinter ReverseComplement ReverseComplement SearchProfile SearchUnigeneFlat SeqDumper SeqEMBL SeqGFF SeqIOTatler SequenceTest SimpleAssemblyTest SmithWatermanExample SSAHA SSAHALarge SSAHASeq SSAHASeqLarge SubHitBuilder SubHitFilter SuperimposeStructures SwissprotToGffFasta TestAlphabetIndexers TestAmbiguity TestDAS TestDASG TestDASH TestDigestIO TestDistribution TestDSN TestEmbl TestEmbl2 TestFrame TestGAME TestGappedSymbolList TestGenbank TestIndexedIntegers TestLocation TestLocation.BooleanBinaryOp TestLocation.LocationBinaryOp TestOrderNAlphabet TestOrderNDistribution TestOrderNSymbolList TestRefSeqPrt TestSimpleAlignment TestSubSequence TestSwissprot TestTranslation TestWindowedSymbolList TestXFFStreaming Tools Tools TraceViewer TutorialEx1 UniProtDemo UploadFlat UserDisplay ViterbiAlign WindowCount XFF2GFF