Package PyDSTool :: Package Toolbox :: Module DSSRT_tools :: Class DSSRT_info
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Class DSSRT_info

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object --+
         |
        DSSRT_info

Instance Methods [hide private]
 
__init__(self, name='', infty_val=10000000000.0)
The optional 'infty_val' argument sets the substitute default finite value used to represent 'infinity', for variables that are not given explicit bounds.
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setUnitBounds(self, coords) source code
 
prepInputs(self, dependencies, nameMap=None) source code
 
prepGraph(self, ics=None, vbars_int={}, vars=None)
Call this multiple times to re-randomize the initial vertex selection.
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makeDefaultGraphics(self) source code
 
makeDSSRTcfg(self, model, gen_name, cfg_filename)
Make DSSRT configuration file from a PyDSTool Generator object that is embedded in a Model object.
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prepCFG(self)
Prepare .cfg file (at least a pre-cursor for later editing by hand)
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outputCFG(self, cfg_filename) source code
 
prepVarNames(self, extvars, intvars) source code
 
prepDEpars(self) source code
 
prepAuxFns(self, auxfndict, pardict, makeMfiles=True)
Prepare auxiliary functions, and create MATLAB m-files for those corresponding to 'tau' and 'inf' functions, unless optional makeMfiles==False.
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dumpTrajData(self, traj, dt, filename, precise=True)
If precise=True (default), this trajectory dump to file may take several minutes: Uses the 'precise' trajectory sample option for trajectories with variable time-steps.
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Inherited from object: __delattr__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __str__

Properties [hide private]

Inherited from object: __class__

Method Details [hide private]

__init__(self, name='', infty_val=10000000000.0)
(Constructor)

source code 

The optional 'infty_val' argument sets the substitute default finite value used to represent 'infinity', for variables that are not given explicit bounds.

Overrides: object.__init__

dumpTrajData(self, traj, dt, filename, precise=True)

source code 

If precise=True (default), this trajectory dump to file may take several minutes: Uses the 'precise' trajectory sample option for trajectories with variable time-steps. Use precise=False option for trajectories calculated at fixed time steps.