29 May 2009    clm order 1.008, 09-149

1.
NAME
2.
SYNOPSIS
3.
DESCRIPTION
4.
OPTIONS
5.
AUTHOR
6.
SEE ALSO

NAME

clm order — reorder indices to represent blocks from different clusterings.

clmorder is not in actual fact a program. This manual page documents the behaviour and options of the clm program when invoked in mode order. The options -h, --apropos, --version, -set, --nop are accessible in all clm modes. They are described in the clm manual page.

SYNOPSIS

clm order [-o fname (output file)] <cl-stack-file>

DESCRIPTION

Given a set of concatenated input clusterings (encoded in a single file/stream), clm order reorders indices so that the ordering represents blocks from different clusterings (which are preferably more or less hierarchically organized). It puts nodes that share many clusters over the different clusters nearby, and puts nodes in larger clusters earlier in the ordering. It is presumed that the clusterings are successive subclusterings, but it need not be strictly the case - clm order will convert the input clusterings to a strictly nested sequence.

clm order expects a trailing file name argument for a file containing concatenated matrices (see mcxio).

OPTIONS

-o fname (output file)

AUTHOR

Stijn van Dongen.

SEE ALSO

mclfamily for an overview of all the documentation and the utilities in the mcl family.