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A

AbsoluteCrossoverScalingControl - Class in edu.uci.ics.jung.visualization.control
scales to the absolute value passed as an argument.
AbsoluteCrossoverScalingControl() - Constructor for class edu.uci.ics.jung.visualization.control.AbsoluteCrossoverScalingControl
 
AbstractArchetypeEdge - Class in edu.uci.ics.jung.graph.impl
 
AbstractArchetypeEdge() - Constructor for class edu.uci.ics.jung.graph.impl.AbstractArchetypeEdge
 
AbstractArchetypeGraph - Class in edu.uci.ics.jung.graph.impl
 
AbstractArchetypeGraph() - Constructor for class edu.uci.ics.jung.graph.impl.AbstractArchetypeGraph
 
AbstractArchetypeGraph.Requirements - Class in edu.uci.ics.jung.graph.impl
 
AbstractArchetypeGraph.Requirements() - Constructor for class edu.uci.ics.jung.graph.impl.AbstractArchetypeGraph.Requirements
 
AbstractArchetypeVertex - Class in edu.uci.ics.jung.graph.impl
 
AbstractArchetypeVertex() - Constructor for class edu.uci.ics.jung.graph.impl.AbstractArchetypeVertex
 
AbstractEdgePaintFunction - Class in edu.uci.ics.jung.graph.decorators
An implementation of EdgePaintFunction that is appropriate for edge shapes that are not filled, such as lines or curves.
AbstractEdgePaintFunction() - Constructor for class edu.uci.ics.jung.graph.decorators.AbstractEdgePaintFunction
 
AbstractEdgeShapeFunction - Class in edu.uci.ics.jung.graph.decorators
An interface for decorators that return a Shape for a specified edge.
AbstractEdgeShapeFunction() - Constructor for class edu.uci.ics.jung.graph.decorators.AbstractEdgeShapeFunction
 
AbstractElement - Class in edu.uci.ics.jung.graph.impl
 
AbstractElement() - Constructor for class edu.uci.ics.jung.graph.impl.AbstractElement
 
AbstractGraphMousePlugin - Class in edu.uci.ics.jung.visualization.control
a base class for GraphMousePlugin instances.
AbstractGraphMousePlugin(int) - Constructor for class edu.uci.ics.jung.visualization.control.AbstractGraphMousePlugin
create an instance with passed values
AbstractHyperedge - Class in edu.uci.ics.jung.graph.impl
This class provides a skeletal implementation of the Hyperedge interface to minimize the effort required to implement this interface.
AbstractHyperedge() - Constructor for class edu.uci.ics.jung.graph.impl.AbstractHyperedge
 
AbstractHyperUnitBPG - Class in edu.uci.ics.jung.graph.impl
Deprecated.
As of version 1.7, JUNG now includes native versions of hypergraph classes.
AbstractHyperUnitBPG() - Constructor for class edu.uci.ics.jung.graph.impl.AbstractHyperUnitBPG
Deprecated.
 
AbstractHypervertex - Class in edu.uci.ics.jung.graph.impl
This class provides a skeletal implementation of the Hypervertex interface to minimize the effort required to implement this interface.
AbstractHypervertex() - Constructor for class edu.uci.ics.jung.graph.impl.AbstractHypervertex
 
AbstractIterativeRanker - Class in scratch.joshua.ranking
 
AbstractIterativeRanker(ArchetypeGraph, int, double) - Constructor for class scratch.joshua.ranking.AbstractIterativeRanker
 
AbstractIterativeRanker(ArchetypeGraph, NumberVertexValue, int, double) - Constructor for class scratch.joshua.ranking.AbstractIterativeRanker
 
AbstractIterativeRanker(ArchetypeGraph, NumberEdgeValue, int, double) - Constructor for class scratch.joshua.ranking.AbstractIterativeRanker
 
AbstractIterativeRanker(ArchetypeGraph, NumberVertexValue, NumberEdgeValue, int, double) - Constructor for class scratch.joshua.ranking.AbstractIterativeRanker
 
AbstractIterativeRanker.UniformIncident - Class in scratch.joshua.ranking
 
AbstractIterativeRanker.UniformIncident() - Constructor for class scratch.joshua.ranking.AbstractIterativeRanker.UniformIncident
 
AbstractIterativeRanker.UniformOut - Class in scratch.joshua.ranking
 
AbstractIterativeRanker.UniformOut() - Constructor for class scratch.joshua.ranking.AbstractIterativeRanker.UniformOut
 
AbstractLayout - Class in edu.uci.ics.jung.visualization
Implements some of the dirty work of writing a layout algorithm, allowing the user to express their major intent more simply.
AbstractLayout(Graph) - Constructor for class edu.uci.ics.jung.visualization.AbstractLayout
Constructor.
AbstractLayout - Class in samples.preview_new_graphdraw
This class is essentially a decorator: for each vertex or edge, it must return a VisVertex or VisEdge object.
AbstractLayout() - Constructor for class samples.preview_new_graphdraw.AbstractLayout
 
AbstractLensSupport - Class in edu.uci.ics.jung.visualization.transform
A class to make it easy to add an examining lens to a jung graph application.
AbstractLensSupport(VisualizationViewer, ModalGraphMouse) - Constructor for class edu.uci.ics.jung.visualization.transform.AbstractLensSupport
create the base class, setting common members and creating a custom GraphMouse
AbstractLensSupport.Lens - Class in edu.uci.ics.jung.visualization.transform
the background for the hyperbolic projection
AbstractLensSupport.Lens(LensTransformer) - Constructor for class edu.uci.ics.jung.visualization.transform.AbstractLensSupport.Lens
 
AbstractLensSupport.LensControls - Class in edu.uci.ics.jung.visualization.transform
the background for the hyperbolic projection
AbstractLensSupport.LensControls(LensTransformer) - Constructor for class edu.uci.ics.jung.visualization.transform.AbstractLensSupport.LensControls
 
AbstractModalGraphMouse - Class in edu.uci.ics.jung.visualization.control
AbstractModalGraphMouse is a PluggableGraphMouse class that manages a collection of plugins for picking and transforming the graph.
AbstractModalGraphMouse() - Constructor for class edu.uci.ics.jung.visualization.control.AbstractModalGraphMouse
 
AbstractPartition - Class in scratch.scott.partition
 
AbstractPartition() - Constructor for class scratch.scott.partition.AbstractPartition
 
AbstractPartitionClass - Class in scratch.scott.partition
 
AbstractPickedState - Class in edu.uci.ics.jung.visualization
An abstract class to support ItemEvents for PickedState
AbstractPickedState() - Constructor for class edu.uci.ics.jung.visualization.AbstractPickedState
 
AbstractPopupGraphMousePlugin - Class in edu.uci.ics.jung.visualization.control
 
AbstractPopupGraphMousePlugin() - Constructor for class edu.uci.ics.jung.visualization.control.AbstractPopupGraphMousePlugin
 
AbstractPopupGraphMousePlugin(int) - Constructor for class edu.uci.ics.jung.visualization.control.AbstractPopupGraphMousePlugin
 
AbstractRanker - Class in edu.uci.ics.jung.algorithms.importance
Abstract class for algorithms that rank nodes or edges by some "importance" metric.
AbstractRanker() - Constructor for class edu.uci.ics.jung.algorithms.importance.AbstractRanker
 
AbstractRanker - Class in scratch.joshua.ranking
 
AbstractRanker(ArchetypeGraph) - Constructor for class scratch.joshua.ranking.AbstractRanker
 
AbstractRanker(ArchetypeGraph, NumberEdgeValue) - Constructor for class scratch.joshua.ranking.AbstractRanker
 
AbstractRenderer - Class in edu.uci.ics.jung.visualization
This abstract class structures much of the annoying bits of Renderers, allowing the user to simply override the important methods and move on.
AbstractRenderer() - Constructor for class edu.uci.ics.jung.visualization.AbstractRenderer
 
AbstractSparseEdge - Class in edu.uci.ics.jung.graph.impl
This class provides a skeletal implementation of the Edge interface to minimize the effort required to implement this interface.
AbstractSparseEdge(Vertex, Vertex) - Constructor for class edu.uci.ics.jung.graph.impl.AbstractSparseEdge
Creates an edge connecting vertices from and to.
AbstractSparseGraph - Class in edu.uci.ics.jung.graph.impl
This class provides a skeletal implementation of the Graph interface to minimize the effort required to implement this interface.
AbstractSparseGraph() - Constructor for class edu.uci.ics.jung.graph.impl.AbstractSparseGraph
Creates an instance of a sparse graph.
AbstractSparseVertex - Class in edu.uci.ics.jung.graph.impl
This class provides a skeletal implementation of the Vertex interface to minimize the effort required to implement this interface.
AbstractSparseVertex() - Constructor for class edu.uci.ics.jung.graph.impl.AbstractSparseVertex
Creates a new instance of a vertex for inclusion in a sparse graph.
AbstractVertexMapper - Class in edu.uci.ics.jung.utils
An abstract class based on VertexMapper that specifies a destination graph.
AbstractVertexMapper(ArchetypeGraph) - Constructor for class edu.uci.ics.jung.utils.AbstractVertexMapper
 
AbstractVertexShapeFunction - Class in edu.uci.ics.jung.graph.decorators
 
AbstractVertexShapeFunction(VertexSizeFunction, VertexAspectRatioFunction) - Constructor for class edu.uci.ics.jung.graph.decorators.AbstractVertexShapeFunction
 
AbstractVertexShapeFunction() - Constructor for class edu.uci.ics.jung.graph.decorators.AbstractVertexShapeFunction
 
acceptEdge(Edge) - Method in class edu.uci.ics.jung.graph.filters.EdgePredicateFilter
 
acceptEdge(Edge) - Method in class edu.uci.ics.jung.graph.filters.GeneralEdgeAcceptFilter
Determines whether the current edge should be accepted into the Graph.
acceptEdge(Edge) - Method in class edu.uci.ics.jung.graph.filters.impl.WeightedEdgeGraphFilter
 
acceptEdge(Edge) - Method in class scratch.danyel.DemoTemporalRenderer.TimeFunc
 
acceptEdge(Edge) - Method in interface scratch.danyel.TemporalFunction
 
acceptVertex(Vertex) - Method in class edu.uci.ics.jung.graph.filters.GeneralVertexAcceptFilter
 
acceptVertex(Vertex) - Method in class edu.uci.ics.jung.graph.filters.impl.AlphabeticVertexFilter
Passes the vertex if its StringLabeller value compares over (or under) the threshold.
acceptVertex(Vertex) - Method in class edu.uci.ics.jung.graph.filters.impl.DropSoloNodesFilter
 
acceptVertex(Vertex) - Method in class edu.uci.ics.jung.graph.filters.impl.NumericDecorationFilter
 
acceptVertex(Vertex) - Method in class edu.uci.ics.jung.graph.filters.TrivialFilter
Returns true for all vertices.
acceptVertex(Vertex) - Method in class edu.uci.ics.jung.graph.filters.VertexPredicateFilter
 
acceptVertex(Vertex) - Method in class scratch.danyel.DemoTemporalRenderer.TimeFunc
 
acceptVertex(Vertex) - Method in interface scratch.danyel.TemporalFunction
 
accumulate(double) - Method in class edu.uci.ics.jung.statistics.StatisticalMoments
statistical moment accumulation up to order 4.
actionPerformed(ActionEvent) - Method in class samples.graph.PluggableRendererDemo
 
actionPerformed(ActionEvent) - Method in class samples.graph.ShowLayouts.GraphChooser
 
actionPerformed(ActionEvent) - Method in class scratch.scott.OpenFileHandler
 
activate(boolean) - Method in class edu.uci.ics.jung.visualization.transform.AbstractLensSupport
 
activate() - Method in class edu.uci.ics.jung.visualization.transform.LayoutLensSupport
 
activate() - Method in interface edu.uci.ics.jung.visualization.transform.LensSupport
 
activate(boolean) - Method in interface edu.uci.ics.jung.visualization.transform.LensSupport
 
activate() - Method in class edu.uci.ics.jung.visualization.transform.shape.ViewLensSupport
 
add(Object) - Method in class edu.uci.ics.jung.graph.impl.AbstractArchetypeGraph.Requirements
 
add(Object) - Method in class edu.uci.ics.jung.utils.MapBinaryHeap
Inserts o into this collection.
add(double) - Method in class edu.uci.ics.jung.utils.MutableDouble
Increases the double's value by value.
add(double) - Method in class edu.uci.ics.jung.utils.MutableInteger
Increases the int's value by value.
add(GraphMousePlugin) - Method in class edu.uci.ics.jung.visualization.control.PluggableGraphMouse
 
add(double, double) - Method in class edu.uci.ics.jung.visualization.Coordinates
Increases the x and y values of this scalar by (x, y).
add(Icon) - Method in class samples.graph.VertexImageShaperDemo.LayeredIcon
 
add(Coordinates, double, double) - Static method in class samples.preview_new_graphdraw.CoordinateUtil
 
add(LayoutTransformer) - Method in class samples.preview_new_graphdraw.iter.TransformerPipeline
 
add(Object) - Method in class scratch.danyel.simplegraph.SimpleGraph
 
add(UserDataContainer) - Method in class scratch.scott.partition.AbstractPartitionClass
 
add(W) - Method in interface scratch.tom.simpleGraph.Edge.Hyper
 
add(V) - Method in class scratch.tom.simpleGraph.HyperEdge
 
addAll(Collection) - Method in class scratch.danyel.simplegraph.SimpleGraph
 
addAll(Collection<W>) - Method in interface scratch.tom.simpleGraph.Edge.Hyper
 
addAll(Collection<V>) - Method in class scratch.tom.simpleGraph.HyperEdge
 
addAllNotInitializers(Collection, Collection) - Method in class edu.uci.ics.jung.graph.impl.AbstractArchetypeGraph
Adds all the predicates in source to the list in target, except those that answer to isInitializationPredicate.
addBipartiteEdge(BipartiteEdge) - Method in class edu.uci.ics.jung.graph.impl.BipartiteGraph
Adds a BipartiteEdge to the Graph.
addBottomControls(JPanel) - Method in class samples.graph.PluggableRendererDemo
 
addChangeListener(ChangeListener) - Method in interface edu.uci.ics.jung.utils.ChangeEventSupport
 
addChangeListener(ChangeListener) - Method in class edu.uci.ics.jung.utils.DefaultChangeEventSupport
 
addChangeListener(ChangeListener) - Method in class edu.uci.ics.jung.visualization.AbstractLayout
Adds a ChangeListener.
addChangeListener(ChangeListener) - Method in class edu.uci.ics.jung.visualization.DefaultVisualizationModel
Adds a ChangeListener.
addChangeListener(ChangeListener) - Method in class edu.uci.ics.jung.visualization.LayoutDecorator
 
addChangeListener(ChangeListener) - Method in class edu.uci.ics.jung.visualization.PersistentLayoutImpl
 
addChangeListener(ChangeListener) - Method in class edu.uci.ics.jung.visualization.transform.MutableAffineTransformer
Adds a ChangeListener.
addChangeListener(ChangeListener) - Method in class edu.uci.ics.jung.visualization.transform.MutableTransformerDecorator
 
addChangeListener(ChangeListener) - Method in interface edu.uci.ics.jung.visualization.VisualizationModel
Register l as a listeners to changes in the model.
addChangeListener(ChangeListener) - Method in class edu.uci.ics.jung.visualization.VisualizationViewer
Adds a ChangeListener.
addChangeListener(ChangeListener) - Method in class scratch.biao.SliderPanel
 
addClickListener(ClickListener) - Method in class samples.preview_new_graphdraw.impl.GraphLayoutPanel
 
addCluster(Set) - Method in class edu.uci.ics.jung.algorithms.cluster.ClusterSet
Adds a new cluster to the collection.
addCollection(Collection, Comparator, Predicate, boolean) - Static method in class edu.uci.ics.jung.utils.CollectionFactory
 
addCollection(Collection, Comparator) - Static method in class edu.uci.ics.jung.utils.CollectionFactory
 
addCollection(Collection, Predicate) - Static method in class edu.uci.ics.jung.utils.CollectionFactory
 
addCollection(Collection, Comparator, Predicate) - Static method in class edu.uci.ics.jung.utils.CollectionFactory
 
addDecorator(Decorator) - Method in class scratch.scott.registry.RegistryDecoratorSet
 
addDecoratorAsDefault(Decorator) - Method in class scratch.scott.registry.RegistryDecoratorSet
 
addDirectedEdge(E, V, V) - Method in interface scratch.joshua.jung_2_0.core.DirectedGraph
 
addDirectedEdge(E, V, V) - Method in class scratch.joshua.jung_2_0.core.SimpleDirectedSparseGraph
Adds edge to the graph.
addDirectedVertices(Graph, int) - Static method in class edu.uci.ics.jung.utils.GraphUtils
Deprecated.
addEdge(Graph, Vertex, Element, Vertex, NumberEdgeValue) - Method in class edu.uci.ics.jung.algorithms.transformation.FoldingTransformer
Creates a new edge from firstEnd to secondEnd in newGraph.
addEdge(Edge) - Method in interface edu.uci.ics.jung.graph.Graph
Adds e to this graph, and returns a reference to the added vertex.
addEdge(Hyperedge) - Method in interface edu.uci.ics.jung.graph.Hypergraph
Adds e to this graph, and returns a reference to the added edge.
addEdge(Edge) - Method in class edu.uci.ics.jung.graph.impl.AbstractSparseGraph
 
addEdge(Edge) - Method in class edu.uci.ics.jung.graph.impl.BipartiteGraph
Deprecated.
Use addBipartiteEdge
addEdge(Hyperedge) - Method in class edu.uci.ics.jung.graph.impl.HypergraphBPG
Deprecated.
Adds a single edge to the graph
addEdge(Hyperedge) - Method in class edu.uci.ics.jung.graph.impl.SetHypergraph
 
addEdge(Edge) - Method in class edu.uci.ics.jung.graph.impl.SparseTree
 
addEdge(Graph, Vertex, Vertex) - Static method in class edu.uci.ics.jung.utils.GraphUtils
Adds an appropriate edge between two vertices.
addEdge(Object, Object) - Method in class scratch.danyel.simplegraph.SimpleGraph
By default, adds an undirected edge
addEdge(Object, Object, boolean) - Method in class scratch.danyel.simplegraph.SimpleGraph
 
addEdge(E) - Method in class scratch.tom.simpleGraph.DefaultGraph
note that vertices in the new edge are added to the graph if not there already
addEdge(E) - Method in interface scratch.tom.simpleGraph.Graph
 
addEdges(Set) - Method in class edu.uci.ics.jung.graph.impl.HypergraphBPG
Deprecated.
 
addEdges(Graph, Set) - Static method in class edu.uci.ics.jung.utils.GraphUtils
Adds all edges in the specified set to g.
addEdges(Hypergraph, Set) - Static method in class edu.uci.ics.jung.utils.GraphUtils
Adds all edges in the specified set to g.
addEdges(Collection<E>) - Method in class scratch.tom.simpleGraph.DefaultGraph
note that vertices in the new edges are added to the graph if not there already
addEdges(Collection<E>) - Method in interface scratch.tom.simpleGraph.Graph
 
addEdges(Graph, Edge[]) - Method in class test.edu.uci.ics.jung.algorithms.shortestpath.TestShortestPath
 
addEdgeSubset(ArchetypeGraph, Predicate) - Static method in class edu.uci.ics.jung.utils.PredicateUtils
Creates an edge subset for g based on p, which will be maintained by the g's SubsetManager.
addEdgeSubset(Predicate) - Method in class edu.uci.ics.jung.utils.SubsetManager
Creates an edge subset based on p.
addGraph_internal(AbstractArchetypeGraph) - Method in class edu.uci.ics.jung.graph.impl.AbstractElement
Attaches this vertex to the specified graph g.
addGraphMouseListener(GraphMouseListener) - Method in class edu.uci.ics.jung.visualization.GraphDraw
Deprecated.
Use getVisualizationViewer.addMouseListener( new MouseListenerTranslator(gel, vv));
addGraphMouseListener(GraphMouseListener) - Method in class edu.uci.ics.jung.visualization.VisualizationViewer
This is the interface for adding a mouse listener.
addItemListener(ItemListener) - Method in class edu.uci.ics.jung.visualization.AbstractPickedState
 
addItemListener(ItemListener) - Method in class edu.uci.ics.jung.visualization.control.AbstractModalGraphMouse
add a listener for mode changes
addItemListener(ItemListener) - Method in class edu.uci.ics.jung.visualization.control.EditingModalGraphMouse
add a listener for mode changes
addListener(GraphEventListener, GraphEventType) - Method in interface edu.uci.ics.jung.graph.ArchetypeGraph
Tells the graph to add gel as a listener for changes in the graph structure
addListener(GraphEventListener, GraphEventType) - Method in class edu.uci.ics.jung.graph.event.GraphListenerHandler
 
addListener(GraphEventListener, GraphEventType) - Method in class edu.uci.ics.jung.graph.impl.AbstractArchetypeGraph
 
addListener(PickEventListener) - Method in class edu.uci.ics.jung.visualization.MultiPickedState
Deprecated.
Use addItemListener
addListener(PickEventListener) - Method in interface edu.uci.ics.jung.visualization.PickedState
Deprecated.
Use addItemListener
addNeighbor_internal(Edge, Vertex) - Method in class edu.uci.ics.jung.graph.impl.AbstractSparseVertex
Adds the specified edge e and vertex v to the internal data structures of this vertex.
addNeighbor_internal(Edge, Vertex) - Method in class edu.uci.ics.jung.graph.impl.DirectedSparseVertex
 
addNeighbor_internal(Edge, Vertex) - Method in class edu.uci.ics.jung.graph.impl.LeanSparseVertex
 
addNeighbor_internal(Edge, Vertex) - Method in class edu.uci.ics.jung.graph.impl.SimpleDirectedSparseVertex
 
addNeighbor_internal(Edge, Vertex) - Method in class edu.uci.ics.jung.graph.impl.SimpleSparseVertex
 
addNeighbor_internal(Edge, Vertex) - Method in class edu.uci.ics.jung.graph.impl.SimpleUndirectedSparseVertex
 
addNeighbor_internal(Edge, Vertex) - Method in class edu.uci.ics.jung.graph.impl.SparseVertex
 
addNeighbor_internal(Edge, Vertex) - Method in class edu.uci.ics.jung.graph.impl.UndirectedSparseVertex
 
addNeighbor_internal(Edge, Vertex) - Method in class scratch.danyel.lazy.LazySparseVertex
 
addNewPartitionClass() - Method in class scratch.scott.partition.AbstractPartition
 
addNewPartitionClasses(int) - Method in class scratch.scott.partition.AbstractPartition
 
AddNodeDemo - Class in samples.graph
Thanks to Brad Allen for an original inspiration for this.
AddNodeDemo() - Constructor for class samples.graph.AddNodeDemo
 
addNotify() - Method in class edu.uci.ics.jung.visualization.BirdsEyeVisualizationViewer
Deprecated.
defers setting the perferred size until the component is live and the layout size is known Adds the mouse clicker at that time.
addPostRenderPaintable(VisualizationViewer.Paintable) - Method in class edu.uci.ics.jung.visualization.VisualizationViewer
 
addPreRenderPaintable(VisualizationViewer.Paintable) - Method in class edu.uci.ics.jung.visualization.VisualizationViewer
 
addRenderingHints(Map) - Method in class edu.uci.ics.jung.visualization.transform.shape.GraphicsDecorator
 
addSlider(LevelFilter, int, int, int) - Method in class edu.uci.ics.jung.visualization.GraphDraw
Deprecated.
Use the PluggableRenderer's vertex and edge visibility predicates instead. See the release notes for version 1.6 for more information.
addStaticFilter(Filter) - Method in class edu.uci.ics.jung.visualization.GraphDraw
Deprecated.
Use the PluggableRenderer's vertex and edge visibility predicates instead. See the release notes for version 1.6 for more information.
addSubLayout(SubLayout) - Method in class edu.uci.ics.jung.visualization.subLayout.SubLayoutDecorator
 
addTool(JComponent) - Method in class edu.uci.ics.jung.visualization.GraphDraw
Deprecated.
Use the PluggableRenderer's vertex and edge visibility predicates instead. See the release notes for version 1.6 for more information.
addToPipeline(LayoutTransformer) - Method in class samples.preview_new_graphdraw.iter.LocalGraphDraw
 
addToSelectionModifiers - Variable in class edu.uci.ics.jung.visualization.control.PickingGraphMousePlugin
additional modifiers for the action of adding to an existing selection
addUndirectedEdge(E, V, V) - Method in class scratch.joshua.jung_2_0.core.SimpleUndirectedSparseGraph
 
addUndirectedEdge(E, V, V) - Method in interface scratch.joshua.jung_2_0.core.UndirectedGraph
 
addUndirectedVertices(Graph, int) - Static method in class edu.uci.ics.jung.utils.GraphUtils
Deprecated.
addUserDatum(Object, Object, UserDataContainer.CopyAction) - Method in class edu.uci.ics.jung.graph.impl.AbstractHyperUnitBPG
Deprecated.
 
addUserDatum(Object, Object, UserDataContainer.CopyAction) - Method in class edu.uci.ics.jung.graph.impl.HypergraphBPG
Deprecated.
 
addUserDatum(Object, Object, UserDataContainer.CopyAction) - Method in class edu.uci.ics.jung.utils.DefaultUserData
Adds user-level information to the node.
addUserDatum(Object, Object, UserDataContainer.CopyAction) - Method in class edu.uci.ics.jung.utils.UnifiedUserData
Adds user-level information to the node.
addUserDatum(Object, Object, UserDataContainer.CopyAction) - Method in interface edu.uci.ics.jung.utils.UserDataContainer
Adds the specified data with the specified key to this object's user data repository, with the specified CopyAction.
addUserDatum(Object, Object, UserDataContainer.CopyAction) - Method in class edu.uci.ics.jung.utils.UserDataDelegate
 
addVertex(Vertex) - Method in interface edu.uci.ics.jung.graph.Graph
Adds v to this graph, and returns a reference to the added vertex.
addVertex(Hypervertex) - Method in interface edu.uci.ics.jung.graph.Hypergraph
Adds v to this graph, and returns a reference to the added vertex.
addVertex(Vertex) - Method in class edu.uci.ics.jung.graph.impl.AbstractSparseGraph
 
addVertex(BipartiteVertex, BipartiteGraph.Choice) - Method in class edu.uci.ics.jung.graph.impl.BipartiteGraph
Adds a single vertex to the graph in the specified partition.
addVertex(Vertex) - Method in class edu.uci.ics.jung.graph.impl.BipartiteGraph
Deprecated.
Use addBipartiteVertex
addVertex(Hypervertex) - Method in class edu.uci.ics.jung.graph.impl.HypergraphBPG
Deprecated.
Adds v to this graph.
addVertex(Hypervertex) - Method in class edu.uci.ics.jung.graph.impl.SetHypergraph
 
addVertex(V) - Method in interface scratch.joshua.jung_2_0.core.ArchetypeGraph
 
addVertex(V) - Method in class scratch.joshua.jung_2_0.core.SimpleDirectedSparseGraph
 
addVertex(V) - Method in class scratch.joshua.jung_2_0.core.SimpleUndirectedSparseGraph
 
addVertex(V) - Method in class scratch.tom.simpleGraph.DefaultGraph
 
addVertex(V) - Method in interface scratch.tom.simpleGraph.Graph
 
addVertexSubset(ArchetypeGraph, Predicate) - Static method in class edu.uci.ics.jung.utils.PredicateUtils
Creates a vertex subset for g based on p, which will be maintained by the g's SubsetManager.
addVertexSubset(Predicate) - Method in class edu.uci.ics.jung.utils.SubsetManager
Creates a vertex subset based on p.
addVertices(Set) - Method in class edu.uci.ics.jung.graph.impl.HypergraphBPG
Deprecated.
 
addVertices(Graph, int) - Static method in class edu.uci.ics.jung.utils.GraphUtils
Adds count vertices into a graph.
addVertices(Graph, Set) - Static method in class edu.uci.ics.jung.utils.GraphUtils
Adds all vertices in the specified set to g.
addVertices(Hypergraph, Set) - Static method in class edu.uci.ics.jung.utils.GraphUtils
Adds all vertices in the specified set to g.
addVertices(Collection<V>) - Method in class scratch.tom.simpleGraph.DefaultGraph
 
addVertices(Collection<V>) - Method in interface scratch.tom.simpleGraph.Graph
 
addVisEdge(Edge) - Method in class samples.preview_new_graphdraw.iter.UpdatableIterableLayout
Creates and returns a default VisEdge based on e.
addVisEdge(Edge) - Method in class samples.preview_new_graphdraw.iterablelayouts.SpringLayout
 
addVisVertex(Vertex) - Method in class samples.preview_new_graphdraw.iter.UpdatableIterableLayout
Creates and returns a default VisVertex based on v.
addVisVertex(Vertex) - Method in class samples.preview_new_graphdraw.iterablelayouts.SpringLayout
 
addX(double) - Method in class edu.uci.ics.jung.visualization.Coordinates
Increases the x value by d.
addY(double) - Method in class edu.uci.ics.jung.visualization.Coordinates
Increases the y value by d.
adjustForGravity() - Method in class edu.uci.ics.jung.visualization.contrib.KKLayout
Shift all vertices so that the center of gravity is located at the center of the screen.
adjustForGravity() - Method in class edu.uci.ics.jung.visualization.contrib.KKLayoutInt
Shift all vertices so that the center of gravity is located at the center of the screen.
adjustForGravity(Set) - Method in class samples.preview_new_graphdraw.iterablelayouts.KKLayout
Shift all vertices so that the center of gravity is located at the center of the screen.
adjustSize(Dimension) - Method in class samples.preview_new_graphdraw.transform.CrookedLineTransformer
 
adjustSize(Dimension) - Method in class samples.preview_new_graphdraw.transform.FitOnScreenTransformer
 
adjustSize(Dimension) - Method in interface samples.preview_new_graphdraw.transform.LayoutTransformer
Adjusts this transformer to be working in this size a space
adjustSize(Dimension) - Method in class samples.preview_new_graphdraw.transform.PipelineResizingTransformer
 
adjustSize(Dimension) - Method in class samples.preview_new_graphdraw.transform.SlightMarginTransformer
 
adjustSizes(Dimension) - Method in class samples.preview_new_graphdraw.iter.TransformerPipeline
 
advance() - Method in class samples.preview_new_graphdraw.iter.IterableLayout
Copies the current layout into the retunrable layout, then moves the visualization one step forward (by calling calculate).
advance() - Method in class samples.preview_new_graphdraw.iterablelayouts.WrappedIterableLayout
 
advance(NumberVertexValue, NumberVertexValue, NumberVertexValue, NumberVertexValue) - Method in class scratch.joshua.ranking.HITSRanker
 
advance(NumberVertexValue, NumberVertexValue) - Method in class scratch.joshua.ranking.HITSRanker
 
advance(NumberVertexValue, NumberVertexValue) - Method in class scratch.joshua.ranking.PageRankRanker
 
advance(NumberVertexValue, NumberVertexValue) - Method in class scratch.joshua.ranking.SingleValueRanker
 
advance(NumberVertexValue) - Method in class scratch.joshua.ranking.SingleValueRanker
 
advancePositions() - Method in class edu.uci.ics.jung.visualization.AbstractLayout
Implementors must override this method in order to create a Layout.
advancePositions() - Method in class edu.uci.ics.jung.visualization.contrib.CircleLayout
Do nothing.
advancePositions() - Method in class edu.uci.ics.jung.visualization.contrib.KKLayout
 
advancePositions() - Method in class edu.uci.ics.jung.visualization.contrib.KKLayoutInt
 
advancePositions() - Method in class edu.uci.ics.jung.visualization.contrib.TreeLayout
?
advancePositions() - Method in class edu.uci.ics.jung.visualization.FadingVertexLayout
Deprecated.
In addition to being a passthrough, this also advances the fade function by calling tick
advancePositions() - Method in class edu.uci.ics.jung.visualization.FRLayout
Moves the iteration forward one notch, calculation attraction and repulsion between vertices and edges and cooling the temperature.
advancePositions() - Method in class edu.uci.ics.jung.visualization.ISOMLayout
Advances the current positions of the graph elements.
advancePositions() - Method in interface edu.uci.ics.jung.visualization.Layout
Advances an incremental visualization.
advancePositions() - Method in class edu.uci.ics.jung.visualization.LayoutDecorator
 
advancePositions() - Method in class edu.uci.ics.jung.visualization.SpringLayout
Relaxation step.
advancePositions() - Method in class edu.uci.ics.jung.visualization.StaticLayout
 
advancePositions() - Method in class scratch.danyel.sample.CircleLayout
Does nothing: this method is non-incremental.'
advancePositions() - Method in class scratch.scott.AestheticSpringVisualizer
Relaxation step.
advancePositions() - Method in class scratch.scott.FastScalableMDS
 
advanceVisualization() - Method in class scratch.danyel.sample.CircleLayout
Relaxation step.
advPlain(String, StringBuffer, int) - Method in class scratch.scott.CSVParser
advPlain: unquoted field; return index of next separator
advQuoted(String, StringBuffer, int) - Method in class scratch.scott.CSVParser
advQuoted: quoted field; return index of next separator
AestheticSpringVisualizer - Class in scratch.scott
The SpringVisualizer package represents a visualization of a set of nodes.
AestheticSpringVisualizer(Graph, JComponent) - Constructor for class scratch.scott.AestheticSpringVisualizer
Constructor for a SpringVisualizer for a raw graph with associated component.
AestheticSpringVisualizer(Graph) - Constructor for class scratch.scott.AestheticSpringVisualizer
Constructor for a SpringVisualizer for a raw graph with associated dimension--the input knows how big the graph is.
AestheticSpringVisualizer(Graph, Dimension) - Constructor for class scratch.scott.AestheticSpringVisualizer
Constructor for a SpringVisualizer for a raw graph with associated dimension--the input knows how big the graph is.
AestheticSpringVisualizer(Graph, AestheticSpringVisualizer.LengthFunction, JComponent) - Constructor for class scratch.scott.AestheticSpringVisualizer
Constructor for a SpringVisualizer for a raw graph with associated component.
AestheticSpringVisualizer(Graph, AestheticSpringVisualizer.LengthFunction, Dimension) - Constructor for class scratch.scott.AestheticSpringVisualizer
Constructor for a SpringVisualizer for a raw graph with associated component.
AestheticSpringVisualizer.LengthFunction - Interface in scratch.scott
If the edge is weighted, then override this method to show what the visualized length is.
AestheticSpringVisualizer.SpringDimensionChecker - Class in scratch.scott
 
AestheticSpringVisualizer.SpringDimensionChecker() - Constructor for class scratch.scott.AestheticSpringVisualizer.SpringDimensionChecker
 
AestheticSpringVisualizer.SpringEdgeData - Class in scratch.scott
 
AestheticSpringVisualizer.SpringEdgeData(Edge) - Constructor for class scratch.scott.AestheticSpringVisualizer.SpringEdgeData
 
AestheticSpringVisualizer.SpringVertexData - Class in scratch.scott
 
AestheticSpringVisualizer.SpringVertexData(Vertex) - Constructor for class scratch.scott.AestheticSpringVisualizer.SpringVertexData
 
AffineTransformer - Class in edu.uci.ics.jung.visualization.transform
Provides methods to map points from one coordinate system to another, by delegating to a wrapped AffineTransform (uniform) and its inverse.
AffineTransformer() - Constructor for class edu.uci.ics.jung.visualization.transform.AffineTransformer
create an instance that does not transform points
AffineTransformer(AffineTransform) - Constructor for class edu.uci.ics.jung.visualization.transform.AffineTransformer
Create an instance with the supplied transform
affineTransformer - Variable in class samples.graph.PluggableRendererDemo
 
aggregateConstraint(Vertex) - Method in class edu.uci.ics.jung.algorithms.metrics.StructuralHoles
The aggregate constraint on v.
ALL_SINGLE_EVENTS - Static variable in interface edu.uci.ics.jung.graph.event.GraphEventType
 
allDataIsDecorated(Decorator) - Method in class scratch.scott.registry.EdgeRegistry
 
allDataIsDecorated(Decorator) - Method in class scratch.scott.registry.UserDataRegistry
 
allDataIsDecorated(Decorator) - Method in class scratch.scott.registry.VertexRegistry
 
allFilters - Variable in class edu.uci.ics.jung.visualization.GraphDraw
Deprecated.
 
alpha - Variable in class scratch.joshua.ranking.PageRankRanker
 
AlphabeticVertexFilter - Class in edu.uci.ics.jung.graph.filters.impl
A small example filter that accepts vertices that are alphabetically past the input value.
AlphabeticVertexFilter(String, StringLabeller, boolean) - Constructor for class edu.uci.ics.jung.graph.filters.impl.AlphabeticVertexFilter
 
angleBetween(Point2D, Point2D) - Method in class edu.uci.ics.jung.visualization.control.RotatingGraphMousePlugin
Returns the angle between two vectors from the origin to points v1 and v2.
angleBetween(Coordinates, double, double) - Static method in class samples.preview_new_graphdraw.CoordinateUtil
 
AnimatedGraphDraw - Class in samples.preview_new_graphdraw.test
 
AnimatedGraphDraw() - Constructor for class samples.preview_new_graphdraw.test.AnimatedGraphDraw
 
AnimatedPickingGraphMousePlugin - Class in edu.uci.ics.jung.visualization.control
AnimatedPickingGraphMousePlugin supports the picking of one Graph Vertex.
AnimatedPickingGraphMousePlugin() - Constructor for class edu.uci.ics.jung.visualization.control.AnimatedPickingGraphMousePlugin
create an instance with default modifiers
AnimatedPickingGraphMousePlugin(int) - Constructor for class edu.uci.ics.jung.visualization.control.AnimatedPickingGraphMousePlugin
create an instance, overriding the default modifiers
animatedPickingPlugin - Variable in class edu.uci.ics.jung.visualization.control.AbstractModalGraphMouse
 
animatedPickingPlugin - Variable in class edu.uci.ics.jung.visualization.control.EditingModalGraphMouse
 
annotateEdge(GraphCollapser.CollapsedEdge, Collection) - Method in class edu.uci.ics.jung.algorithms.blockmodel.GraphCollapser
Overridable method annotates the new collapsed edge with userdata from the original set.
annotateVertex(GraphCollapser.CollapsedVertex, Set) - Method in class edu.uci.ics.jung.algorithms.blockmodel.GraphCollapser
Overridable method annotates the new collapsed vertex with userdata from the rootset.
annotateVertex(LazySparseVertex) - Method in class scratch.danyel.lazy.LazySparseVertexFactory
Ok, here'a a Vertex.
annotateVertex(LazySparseVertex) - Method in class scratch.danyel.lazy.LazyWebCrawler.WebCrawlerFactory
 
append(Filter) - Method in class edu.uci.ics.jung.graph.filters.SerialFilter
Adds a filter to the end of the sequence of filters.
applyFilter(Graph) - Method in class edu.uci.ics.jung.visualization.AbstractLayout
Applies the filter to the current graph.
applyFilter(Graph) - Method in class edu.uci.ics.jung.visualization.contrib.TreeLayout
 
applyFilter(Graph) - Method in class edu.uci.ics.jung.visualization.FadingVertexLayout
Deprecated.
Tracks the changes in the set of visible vertices from the set of actual vertices.
applyFilter(Graph) - Method in interface edu.uci.ics.jung.visualization.Layout
Sets this filtered graph to be the applicable graph.
applyFilter(Graph) - Method in class edu.uci.ics.jung.visualization.LayoutDecorator
 
applyFilter(Graph) - Method in class scratch.danyel.sample.CircleLayout
 
applyFilter(Graph) - Method in class scratch.scott.AestheticSpringVisualizer
 
ArchetypeEdge - Interface in edu.uci.ics.jung.graph
A interface for edge implementations in generalized graphs.
ArchetypeGraph - Interface in edu.uci.ics.jung.graph
A generalized graph which consists of an ArchetypeVertex set and an ArchetypeEdge set.
ArchetypeGraph<V,E> - Interface in scratch.joshua.jung_2_0.core
 
ArchetypeVertex - Interface in edu.uci.ics.jung.graph
A interface for vertex implementations in generalized graphs.
areEquivalent(ArchetypeGraph, ArchetypeGraph) - Static method in class edu.uci.ics.jung.utils.GraphUtils
Returns true if g1 and g2 have equivalent vertex and edge sets (that is, if each vertex and edge in g1 has an equivalent in g2, and vice versa), and false otherwise.
areIncident(V, E) - Method in interface scratch.joshua.jung_2_0.core.ArchetypeGraph
 
areIncident(V, E) - Method in class scratch.joshua.jung_2_0.core.SimpleAbstractSparseGraph
 
areNeighbors(V, V) - Method in interface scratch.joshua.jung_2_0.core.ArchetypeGraph
 
areNeighbors(V, V) - Method in class scratch.joshua.jung_2_0.core.SimpleAbstractSparseGraph
 
Arrow - Class in edu.uci.ics.jung.visualization.contrib
This pluggable utility paints either a "classic" or a "sleek" filled arrow on a given edge.
Arrow(String, int, int) - Constructor for class edu.uci.ics.jung.visualization.contrib.Arrow
 
arrow_placement_tolerance - Variable in class edu.uci.ics.jung.visualization.PluggableRenderer
 
ArrowFactory - Class in edu.uci.ics.jung.visualization
A utility class for creating arrowhead shapes.
ArrowFactory() - Constructor for class edu.uci.ics.jung.visualization.ArrowFactory
 
as_list - Variable in class edu.uci.ics.jung.io.HypergraphReader
If true, specifies that each line of input implicitly represents a list of edges, where the first token specifies one endpoint, and the subsequent tokens specify a sequence of opposite endpoints.
asList - Variable in class edu.uci.ics.jung.io.BipartiteGraphReader
If true, specifies that each line of input implicitly represents a list of edges, where the first token specifies one endpoint, and the subsequent tokens specify a sequence of opposite endpoints.
aspectRatio - Variable in class edu.uci.ics.jung.visualization.Lens
Deprecated.
ratio of width to height
assemble(boolean) - Method in class edu.uci.ics.jung.graph.filters.UnassembledGraph
Constructs a new graph based on the source graph.
assemble() - Method in class edu.uci.ics.jung.graph.filters.UnassembledGraph
 
assignDefaultEdgeTransitionWeights() - Method in class edu.uci.ics.jung.algorithms.importance.AbstractRanker
 
assignDefaultLabels(Set, int) - Method in class edu.uci.ics.jung.graph.decorators.StringLabeller
Assigns textual labels to every vertex passed in.
assignDefaultLabels(Set, int) - Method in class edu.uci.ics.jung.graph.decorators.ToStringLabeller
This method is not meaningful; it throws an IllegalArgumentException
assignToClusters(Map, Set) - Method in class edu.uci.ics.jung.algorithms.cluster.KMeansClusterer
Assigns each object to the cluster whose centroid is closest to the object.
AUTHORITY_KEY - Static variable in class edu.uci.ics.jung.algorithms.importance.HITS
 
AUTHORITY_KEY - Static variable in class edu.uci.ics.jung.algorithms.importance.HITSWithPriors
 
average() - Method in class edu.uci.ics.jung.statistics.Histogram
Returns the average of the values accumulated in the histogram bins.
average() - Method in class edu.uci.ics.jung.statistics.StatisticalMoments
 
average(long[]) - Method in class edu.uci.ics.jung.visualization.DefaultVisualizationModel
Returns the double average of a number of long values.
average(long[]) - Method in class edu.uci.ics.jung.visualization.VisualizationViewer
Returns the double average of a number of long values.
averageDistances(ArchetypeGraph, Distance) - Static method in class edu.uci.ics.jung.statistics.GraphStatistics
For each vertex v in graph, calculates the average shortest path length from v to all other vertices in graph using the metric specified by d, and returns the results in a Map from vertices to Double values.
averageDistances(ArchetypeGraph) - Static method in class edu.uci.ics.jung.statistics.GraphStatistics
For each vertex v in g, calculates the average shortest path length from v to all other vertices in g, ignoring edge weights.
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