Genetics::Haplotype
$ht = new Genetics::Haplotype(name => '12pEA1.1', importID => 268, dateCreated => $today, Keywords => [ {name => "Test Data", dataType => "Boolean", value => 1}, ], MarkerCollection => {name => "12pEA1", importID => 267}, Alleles => [ {name => 2, type => "code"}, {name => "C", type => "nucleotide"} ], ) ;
See the GenPerl Tutorial for more information.
Haplotype objects represent a specific combination of alleles that are known, or predicted, to be segregating togehter. The alleles in a haplotype may be experimentally determined or predicted statistically.
This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Currently, all feedback should be sent directly to the author.
Email: mathias@genomica.com
Phone: (720) 565-4029
Address: Genomica Corporation 1745 38th Street Boulder, CO 80301
The rest of the documentation describes each of the object variables and methods. The names of internal variables and methods are preceded with an underscore (_).
Genetics::Object Superclass strict Just to be anal vars Global variables
Function : Print an XML representation of the object. Argument : A Genetics::StudyVariable object and the XML::Writer object being used to generate the XML. Returns : String Scope : Public Instance Method Comments : Calls Genetics::Object->printGeneralXML to generate XML elements common to all Genetics::Object objects.