E-Cell Simulation Environment Version 3.1.100 User's Manual (Draft: Dec. 18, 2003) | ||
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The following Process classes are straightforward
implementations of differential equations, and can be used
with the general-purpose
DifferentialSteppers
such as
ODE45Stepper
,
ODE23Stepper
, and
FixedODE1Stepper
.
In the current version, most of the classes represent certain reaction rate equations. Of course it is not limited to chemical and biochemical simulations.
CatalyzedMassActionFluxProcess
DecayFluxProcess
IsoUniUniFluxProcess
MassActionProcess
MichaelisUniUniProcess
MichaelisUniUniReversibleProcess
OrderedBiBiFluxProcess
OrderedBiUniFluxProcess
OrderedUniBiFluxProcess
PingPongBiBiFluxProcess
RandomBiBiFluxProcess
RandomBiUniFluxProcess
RandomUniBiFluxProcess
PythonFluxProcess
SSystemProcess
GammaProcess
Under development.
GillespieProcess
This Process must be used with a Gillespie-type Stepper,
such as NRStepper
.
RapidEquilibriumProcess
PythonProcess