Package Bio :: Package Align :: Package Applications :: Module _TCoffee :: Class TCoffeeCommandline
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Class TCoffeeCommandline

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                     object --+    
                              |    
Application.AbstractCommandline --+
                                  |
                                 TCoffeeCommandline

Commandline object for the TCoffee alignment program.

Implements a VERY limited number of options.

Instance Methods [hide private]
 
__init__(self, cmd='t_coffee', **kwargs)
Create a new instance of a command line wrapper object.
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Inherited from Application.AbstractCommandline: __call__, __repr__, __setattr__, __str__, set_parameter

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __sizeof__, __subclasshook__

Class Variables [hide private]
  SEQ_TYPES = ['dna', 'protein', 'dna_protein']
Properties [hide private]

Inherited from object: __class__

Method Details [hide private]

__init__(self, cmd='t_coffee', **kwargs)
(Constructor)

source code 

Create a new instance of a command line wrapper object.

Overrides: object.__init__
(inherited documentation)