Package Bio :: Package Motif :: Package Parsers :: Module MEME :: Class _MEMEConsumer
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Class _MEMEConsumer

source code

Consumer that can receive events from MEME Scanner (DEPRECATED).

This is the Consumer object that should be passed to the MEME Scanner.

This class is DEPRECATED; please use the read() function in this module instead.

Instance Methods [hide private]
 
__init__(self) source code
 
_version(self, line) source code
 
_datafile(self, line) source code
 
_alphabet(self, line) source code
 
_sequence_name(self, line) source code
 
_commandline(self, line) source code
 
_add_motif_with_info(self, line) source code
 
motif_name(self, line) source code
 
add_instance(self, line) source code
 
add_to_pssm(self, line) source code
 
add_to_logodds(self, line) source code
 
noevent(self, line) source code