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T
t_caret()
(in
LocationScanner
)
test_everything()
(in
Martel.test.test_RecordReader
)
tname()
(in
Generic_dbutils
)
t_close_paren()
(in
DecodeScanner
)
test_everything()
(in
Martel.test.test_RecordReader2
)
To
(in
Bio.EUtils.DTDs.eSearch_020511
)
t_close_paren()
(in
LocationScanner
)
test_everything_lines()
(in
Martel.test.test_RecordReader
)
to_alignment()
(in
Bio.SeqIO
)
t_colon()
(in
LocationScanner
)
test_expand()
(in
Martel.test.test_Time
)
to_circular()
(in
FormattedSeq
)
t_comma()
(in
DecodeScanner
)
test_Expression
(in
Martel.test
)
to_clustal()
(in
FormatConverter
)
t_comma()
(in
LocationScanner
)
test_fasta()
(in
Martel.test.test_RecordReader
)
to_dict()
(in
Bio.SeqIO
)
t_default()
(in
GenericScanner
)
test_file()
(in
Martel.test.support
)
to_fasta()
(in
FormatConverter
)
t_dot()
(in
LocationScanner
)
test_filter()
(in
Martel.test.test_LAX
)
to_fasta()
(in
Motif
)
t_double_colon()
(in
LocationScanner
)
test_Float()
(in
Martel.test.test_macros
)
to_generic()
(in
MultipleAlignment
)
t_double_dot()
(in
LocationScanner
)
test_Generate
(in
Martel.test
)
to_linear()
(in
FormattedSeq
)
t_float()
(in
DecodeScanner
)
test_group()
(in
Martel.test.test_Expression
)
to_one_letter_code
(in
Bio.PDB.DSSP'
)
t_functionname()
(in
DecodeScanner
)
test_group_names()
(in
Martel.test.test_Expression
)
to_one_letter_code
(in
Bio.PDB.FragmentMapper'
)
t_greater_than()
(in
LocationScanner
)
test_groupref()
(in
Martel.test.test_Expression
)
to_one_letter_code
(in
Bio.PDB.HSExposure
)
t_integer()
(in
LocationScanner
)
test_header_footer1()
(in
Martel.test.test_Iterator
)
to_one_letter_code
(in
Bio.PDB.PSEA
)
t_less_than()
(in
LocationScanner
)
test_header_footer1()
(in
Martel.test.test_Parser
)
to_one_letter_code
(in
Bio.PDB.ResidueDepth'
)
t_open_paren()
(in
DecodeScanner
)
test_header_footer2()
(in
Martel.test.test_Iterator
)
to_one_letter_code
(in
Bio.PDB.StructureAlignment'
)
t_open_paren()
(in
LocationScanner
)
test_header_footer2()
(in
Martel.test.test_Parser
)
to_one_letter_code
(in
Bio.SCOP.Raf
)
t_pipe()
(in
DecodeScanner
)
test_header_footer3()
(in
Martel.test.test_Iterator
)
to_string()
(in
Tree
)
t_string()
(in
DecodeScanner
)
test_header_footer3()
(in
Martel.test.test_Parser
)
toClaRecord()
(in
Domain
)
t_symbol()
(in
LocationScanner
)
test_header_footer4()
(in
Martel.test.test_Iterator
)
toDesRecord()
(in
Domain
)
t_unsigned_integer()
(in
LocationScanner
)
test_header_footer4()
(in
Martel.test.test_Parser
)
toDesRecord()
(in
Node
)
t_whitespace()
(in
DecodeScanner
)
test_header_footer5()
(in
Martel.test.test_Iterator
)
ToEol()
(in
Martel
)
tab
(in
Bio.MetaTool.metatool_format
)
test_header_footer5()
(in
Martel.test.test_Parser
)
toHieRecord()
(in
Node
)
tabformat
(in
Martel.test.testformats.delimiter
)
test_header_footer6()
(in
Martel.test.test_Iterator
)
Token
(in
Bio.Decode
)
TabIO
(in
Bio.SeqIO
)
test_header_footer6()
(in
Martel.test.test_Parser
)
Token
(in
Bio.GenBank.LocationParser
)
TabIterator()
(in
Bio.SeqIO.TabIO
)
test_header_footer7()
(in
Martel.test.test_Iterator
)
tokenize()
(in
DecodeScanner
)
TableInfo
(in
Bio.Search
)
test_header_footer7()
(in
Martel.test.test_Parser
)
tokenize()
(in
LocationScanner
)
TabWriter
(in
Bio.SeqIO.TabIO
)
test_header_footer8()
(in
Martel.test.test_Parser
)
tokenize()
(in
GenericScanner
)
TaggingConsumer
(in
Bio.ParserSupport
)
test_header_footer_parser()
(in
Martel.test.test_attrs
)
Tokenizer
(in
Martel.msre_parse
)
take()
(in
Bio.listfns
)
test_hf1()
(in
Martel.test.test_IterParser
)
tolower
(in
Bio.EUtils.DTDs.LinkOut
)
take_byfn()
(in
Bio.listfns
)
test_hf2()
(in
Martel.test.test_IterParser
)
tomutable()
(in
Seq
)
tan
(in
Bio.Affy.CelFile
)
test_hf3()
(in
Martel.test.test_IterParser
)
TOOL
(in
Bio.EUtils.ThinClient
)
tan
(in
Bio.distance
)
test_hf4()
(in
Martel.test.test_IterParser
)
ToSep()
(in
Martel
)
tanh
(in
Bio.Affy.CelFile
)
test_hf5()
(in
Martel.test.test_IterParser
)
toseq()
(in
MutableSeq
)
tanh
(in
Bio.distance
)
test_hf6()
(in
Martel.test.test_IterParser
)
toseq()
(in
DBSeq
)
target_location()
(in
Feature
)
test_hf7()
(in
Martel.test.test_IterParser
)
tostring()
(in
Crystal
)
taxonomy()
(in
_FeatureConsumer
)
test_hf8()
(in
Martel.test.test_IterParser
)
tostring()
(in
ElementNode
)
taxonomy()
(in
_RecordConsumer
)
test_Iterator
(in
Martel.test
)
tostring()
(in
Prosite
)
taxonomy_id()
(in
_RecordConsumer
)
test_IterParser
(in
Martel.test
)
tostring()
(in
MutableSeq
)
taxonomy_id()
(in
_SequenceConsumer
)
test_LAX
(in
Martel.test
)
tostring()
(in
Seq
)
TAXSET
(in
Bio.Nexus.Nexus
)
test_list
(in
Martel.test.test_swissprot38
)
tostring()
(in
DBSeq
)
tell()
(in
ReseekFile
)
test_literal()
(in
Martel.test.test_Expression
)
total_weight()
(in
Bio.utils
)
tell()
(in
UndoHandle
)
test_macros
(in
Martel.test
)
total_weight_range()
(in
Bio.utils
)
tell()
(in
Tokenizer
)
test_make_iterparsers1()
(in
Martel.test.test_IterParser
)
toupper
(in
Bio.EUtils.DTDs.LinkOut
)
TelomereSegment
(in
Bio.Graphics.BasicChromosome
)
test_make_iterparsers2()
(in
Martel.test.test_IterParser
)
Tournament
(in
Bio.GA.Selection
)
TempFile
test_max_repeat()
(in
Martel.test.test_Expression
)
TournamentSelection
(in
Bio.GA.Selection.Tournament
)
Template
(in
Bio.PopGen.SimCoal
)
test_minimize()
(in
Martel.test.test_Expression
)
tr()
(in
Bio.Decode
)
Term
(in
Bio.EUtils.DTDs.eSearch_020511
)
test_missing_end1()
(in
Martel.test.test_IterParser
)
trace()
(in
Chain
)
Term
(in
Bio.EUtils.Datatypes
)
test_missing_end2()
(in
Martel.test.test_IterParser
)
trace_array_max_index()
(in
_RecordConsumer
)
TermCount
(in
Bio.EUtils.DTDs.eInfo_020511
)
test_missing_end3()
(in
Martel.test.test_IterParser
)
trace_array_min_index()
(in
_RecordConsumer
)
terminal()
(in
GenericASTBuilder
)
test_multi()
(in
Martel.test.test_attrs
)
trace_peak_area_ratio()
(in
_RecordConsumer
)
terminal_gap_to_missing()
(in
Nexus
)
test_nocase()
(in
Martel.test.test_Expression
)
track_position()
(in
Martel.Generate
)
terminator()
(in
_RecordConsumer
)
test_nodes()
(in
Martel.test.test_Expression
)
train()
(in
BaumWelchTrainer
)
terminator()
(in
_RecordConsumer
)
test_none()
(in
Martel.test.test_attrs
)
train()
(in
KnownStateTrainer
)
TermSet
(in
Bio.EUtils.DTDs.eSearch_020511
)
test_nothing()
(in
Martel.test.test_RecordReader
)
train()
(in
Bio.LogisticRegression
)
test
(in
Martel
)
test_nothing()
(in
Martel.test.test_RecordReader2
)
train()
(in
Bio.MaxEntropy
)
test()
(in
Bio.Decode
)
test_nothing_lines()
(in
Martel.test.test_RecordReader
)
train()
(in
Bio.NaiveBayes
)
test()
(in
Bio.EUtils.ReseekFile
)
test_null_op()
(in
Martel.test.test_Expression
)
train()
(in
BasicNetwork
)
test()
(in
Storage
)
test_optimize
(in
Martel.test
)
train()
(in
Bio.kNN
)
test()
(in
Martel.test
)
test_Parser
(in
Martel.test
)
train_bw()
(in
Bio.MarkovModel
)
test()
(in
Martel.test.test_Expression
)
test_ParseRecords
(in
Martel.test
)
train_visible()
(in
Bio.MarkovModel
)
test()
(in
Martel.test.test_Generate
)
test_path
(in
Bio.PopGen.SimCoal
)
Trainer
(in
Bio.HMM
)
test()
(in
Martel.test.test_IterParser
)
test_Punctuation()
(in
Martel.test.test_macros
)
Training
(in
Bio.NeuralNetwork
)
test()
(in
Martel.test.test_Iterator
)
test_reader_parser()
(in
Martel.test.test_Parser
)
TrainingExample
(in
Bio.NeuralNetwork.Training
)
test()
(in
Martel.test.test_LAX
)
test_reads()
(in
Bio.EUtils.ReseekFile
)
TrainingSequence
(in
Bio.HMM.Trainer
)
test()
(in
Martel.test.test_ParseRecords
)
test_record_parser()
(in
Martel.test.test_Parser
)
TranalignCommandline
(in
Bio.Emboss.Applications
)
test()
(in
Martel.test.test_Parser
)
test_record_parser()
(in
Martel.test.test_attrs
)
Transcribe
(in
Bio
)
test()
(in
Martel.test.test_RecordReader
)
test_RecordReader
(in
Martel.test
)
Transcribe
(in
Bio.Transcribe
)
test()
(in
Martel.test.test_RecordReader2
)
test_RecordReader2
(in
Martel.test
)
transcribe()
(in
Seq
)
test()
(in
Martel.test.test_Time
)
test_ri1()
(in
Martel.test.test_IterParser
)
transcribe()
(in
Bio.Seq
)
test()
(in
Martel.test.test_attrs
)
test_ri2()
(in
Martel.test.test_IterParser
)
transcribe()
(in
Transcribe
)
test()
(in
Martel.test.test_convert_re
)
test_ri3()
(in
Martel.test.test_IterParser
)
transcribe()
(in
Bio.utils
)
test()
(in
Martel.test.test_delimiter
)
test_same_tag()
(in
Martel.test.test_attrs
)
transform()
(in
Atom
)
test()
(in
Martel.test.test_macros
)
test_seq()
(in
Martel.test.test_Expression
)
transformation()
(in
StepMatrix
)
test()
(in
Martel.test.test_optimize
)
test_single()
(in
Martel.test.test_attrs
)
transitions_from()
(in
HiddenMarkovModel
)
test()
(in
Martel.test.test_swissprot38
)
test_Spaces()
(in
Martel.test.test_macros
)
Translate
(in
Bio
)
test1()
(in
Martel.test.test_Iterator
)
test_start()
(in
Martel.test.test_RecordReader
)
translate()
(in
Feature
)
test1()
(in
Martel.test.test_LAX
)
test_start_lines()
(in
Martel.test.test_RecordReader
)
translate()
(in
FeatureAggregate
)
test1()
(in
Martel.test.test_optimize
)
test_startswith()
(in
Martel.test.test_RecordReader2
)
translate()
(in
Seq
)
test10()
(in
Martel.test.test_optimize
)
test_startswith_errors()
(in
Martel.test.test_RecordReader2
)
translate()
(in
Bio.Seq
)
test11()
(in
Martel.test.test_optimize
)
test_startswith_exhaustive()
(in
Martel.test.test_RecordReader2
)
translate()
(in
Bio.SeqUtils
)
test12()
(in
Martel.test.test_optimize
)
test_startswith_generic()
(in
Martel.test.test_RecordReader2
)
translate()
(in
Translator
)
test13()
(in
Martel.test.test_optimize
)
test_startswith_remainder()
(in
Martel.test.test_RecordReader2
)
translate()
(in
Bio.utils
)
test14()
(in
Martel.test.test_optimize
)
test_startswith_SP()
(in
Martel.test.test_RecordReader2
)
translate_to_stop()
(in
Translator
)
test15()
(in
Martel.test.test_optimize
)
test_str()
(in
Martel.test.test_Expression
)
translate_to_stop()
(in
Bio.utils
)
test16()
(in
Martel.test.test_optimize
)
test_string()
(in
Martel.test.support
)
Translation
(in
Bio.EUtils.DTDs.eSearch_020511
)
test17()
(in
Martel.test.test_optimize
)
test_swissprot38
(in
Martel.test
)
TranslationError
(in
Bio.Data.CodonTable
)
test18()
(in
Martel.test.test_optimize
)
test_syntax()
(in
Martel.test.test_Time
)
TranslationSet
(in
Bio.EUtils.DTDs.eSearch_020511
)
test19()
(in
Martel.test.test_optimize
)
test_terms()
(in
Martel.test.test_Time
)
TranslationStack
(in
Bio.EUtils.DTDs.eSearch_020511
)
test2()
(in
Martel.test.test_Iterator
)
test_Time
(in
Martel.test
)
Translator
(in
Bio.Translate
)
test2()
(in
Martel.test.test_optimize
)
test_times()
(in
Martel.test.test_Time
)
transliterated_title()
(in
_RecordConsumer
)
test20()
(in
Martel.test.test_optimize
)
test_ToEol()
(in
Martel.test.test_macros
)
Tree
(in
Bio.Nexus.Trees
)
test3()
(in
Martel.test.test_Iterator
)
test_ToSep()
(in
Martel.test.test_macros
)
treecluster()
(in
Record
)
test3()
(in
Martel.test.test_optimize
)
test_Unprintable()
(in
Martel.test.test_macros
)
TreeError
(in
Bio.Nexus.Trees
)
test4()
(in
Martel.test.test_Iterator
)
test_until()
(in
Martel.test.test_RecordReader
)
Trees
(in
Bio.Nexus
)
test4()
(in
Martel.test.test_optimize
)
test_until()
(in
Martel.test.test_RecordReader2
)
triefind
(in
Bio
)
test5()
(in
Martel.test.test_Iterator
)
test_until_lines()
(in
Martel.test.test_RecordReader
)
trim()
(in
_RecordConsumer
)
test5()
(in
Martel.test.test_optimize
)
test_valid_names()
(in
Martel.test.test_Expression
)
True
(in
Bio.EUtils.POM
)
test6()
(in
Martel.test.test_optimize
)
test_Word()
(in
Martel.test.test_macros
)
True_
(in
Bio.Affy.CelFile
)
test7()
(in
Martel.test.test_optimize
)
testformats
(in
Martel.test
)
True_
(in
Bio.distance
)
test8()
(in
Martel.test.test_optimize
)
Text
true_divide
(in
Bio.Affy.CelFile
)
test9()
(in
Martel.test.test_optimize
)
text
(in
Martel.test.test_Iterator
)
true_divide
(in
Bio.distance
)
test__add__()
(in
Martel.test.test_Expression
)
text
(in
Martel.test.test_ParseRecords
)
turn3
(in
align
)
test__or__()
(in
Martel.test.test_Expression
)
text()
(in
ElementNode
)
turn4
(in
align
)
test_alt()
(in
Martel.test.test_Expression
)
text()
(in
_RecordConsumer
)
turn5
(in
align
)
test_any()
(in
Martel.test.test_Expression
)
ThinClient
(in
Bio.EUtils
)
two_mat_DJS()
(in
Bio.SubsMat
)
test_assert()
(in
Martel.test.test_Expression
)
ThinClient
(in
Bio.EUtils.ThinClient
)
two_mat_relative_entropy()
(in
Bio.SubsMat
)
test_at_beginning()
(in
Martel.test.test_Expression
)
this_module
(in
Bio.MarkovModel
)
TwoBound
(in
Bio.GenBank.LocationParser
)
test_at_end()
(in
Martel.test.test_Expression
)
this_module
(in
Bio.pairwise2
)
TwoCrossover
(in
Bio.GA.Crossover.GeneralPoint
)
test_attrs
(in
Martel.test
)
three_prime()
(in
Location
)
TwoCuts
(in
Bio.Restriction.Restriction
)
test_convert_re
(in
Martel.test
)
three_prime_range()
(in
Location
)
TwoPoint
(in
Bio.GA.Crossover
)
test_count()
(in
Martel.test.test_RecordReader
)
three_to_index()
(in
Bio.PDB.Polypeptide
)
TwoPointCrossover
(in
Bio.GA.Crossover.TwoPoint
)
test_count_lines()
(in
Martel.test.test_RecordReader
)
three_to_one()
(in
Bio.PDB.Polypeptide
)
type
(in
Integer
)
test_count_lines()
(in
Martel.test.test_RecordReader2
)
ThreeLetterProtein
(in
Bio.Alphabet
)
type
(in
Symbol
)
test_count_lines_lines()
(in
Martel.test.test_RecordReader
)
threshold()
(in
_ParametersConsumer
)
type
(in
UnsignedInteger
)
test_DelimitedFields()
(in
Martel.test.test_macros
)
threshold()
(in
_Consumer
)
type_metabolite
(in
Bio.MetaTool.metatool_format
)
test_delimiter
(in
Martel.test
)
Time
(in
Martel
)
typecodes
(in
Bio.Affy.CelFile
)
test_Digits()
(in
Martel.test.test_macros
)
time()
(in
_RecordConsumer
)
typecodes
(in
Bio.distance
)
test_docstring()
(in
Martel.test.test_Time
)
time_file()
(in
Martel.test.support
)
TypeCompiler
(in
Bio.Restriction._Update.RestrictionCompiler
)
test_dot()
(in
Martel.test.test_Expression
)
timetuple()
(in
Date
)
typeDict
(in
Bio.Affy.CelFile
)
test_end()
(in
Martel.test.test_RecordReader
)
title()
(in
_AlignmentConsumer
)
typedict
(in
Bio.Restriction.Restriction_Dictionary
)
test_end_lines()
(in
Martel.test.test_RecordReader
)
title()
(in
_FeatureConsumer
)
typedict
(in
Bio.Restriction._Update.RestrictionCompiler
)
test_endswith()
(in
Martel.test.test_RecordReader2
)
title()
(in
_RecordConsumer
)
typeDict
(in
Bio.distance
)
test_endswith_errors()
(in
Martel.test.test_RecordReader2
)
title()
(in
_RecordConsumer
)
typeNA
(in
Bio.Affy.CelFile
)
test_endswith_exhaustive()
(in
Martel.test.test_RecordReader2
)
TITLE()
(in
_RecordConsumer
)
typeNA
(in
Bio.distance
)
test_endswith_generic()
(in
Martel.test.test_RecordReader2
)
title_abbreviation()
(in
_RecordConsumer
)
typestring()
(in
GenericASTTraversal
)
test_endswith_remainder()
(in
Martel.test.test_RecordReader2
)
title_line
(in
Bio.IntelliGenetics.intelligenetics_format
)
typestring()
(in
GenericParser
)
test_endswith_SP()
(in
Martel.test.test_RecordReader2
)
title_line()
(in
_RecordConsumer
)
test_escape()
(in
Martel.test.test_attrs
)
Tm_staluc()
(in
Bio.SeqUtils.MeltingTemp
)
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