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Identifier Index
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_
]
D
d
(in
Bio.EUtils.setup
)
DEFAULT_BOUNDARY_CHARS
(in
Bio.triefind
)
Dispatcher
(in
Martel.Dispatch
)
d1_to_index
(in
Bio.PDB.Polypeptide
)
default_manager
(in
Bio.PropertyManager
)
DispatchHandler
(in
Martel.Dispatch
)
d3_to_index
(in
Bio.PDB.Polypeptide
)
DEFAULT_PSEUDO
(in
MarkovModelBuilder
)
display()
(in
Tree
)
Data
(in
Bio
)
DEFAULT_VERSION
(in
ClustalAlignment
)
DisplayRepresentation
(in
Bio.Graphics
)
DATA
(in
MMCIF2Dict
)
defaultdict
(in
Bio.SCOP.FileIndex
)
distance
(in
Bio
)
data
(in
Seq
)
DEFAULTNEXUS
(in
Bio.Nexus.Nexus
)
distance()
(in
Tree
)
data
(in
DBSeq
)
Defined
(in
Bio.Restriction.Restriction
)
distancematrix()
(in
Record
)
data1
(in
Martel.test.test_RecordReader2
)
defined()
(in
Analysis
)
Distribution
(in
Bio.Graphics
)
data_file_division()
(in
_FeatureConsumer
)
definition()
(in
_FeatureConsumer
)
DistributionPage
(in
Bio.Graphics.Distribution
)
data_file_division()
(in
_RecordConsumer
)
definition()
(in
_RecordConsumer
)
Diversity
(in
Bio.GA.Selection
)
data_org()
(in
_RecordConsumer
)
degrees
(in
Bio.Affy.CelFile
)
DiversitySelection
(in
Bio.GA.Selection.Diversity
)
data_table()
(in
Bio.NMR.xpktools
)
degrees
(in
Bio.distance
)
divide
(in
Bio.Affy.CelFile
)
databank_reference()
(in
_RecordConsumer
)
del_attribute()
(in
ClassHolder
)
divide
(in
Bio.distance
)
Database
(in
Bio.EUtils.DTDs.LinkOut
)
del_attribute()
(in
FunctionHolder
)
DIWV
(in
Bio.SeqUtils.ProtParamData
)
Database
(in
Bio.Search
)
del_parser()
(in
POMDocument
)
DNA
(in
Bio.Restriction.Restriction
)
database()
(in
_DatabaseReportConsumer
)
DelimitedFields()
(in
Martel
)
DNA
(in
Bio.Restriction._Update.RestrictionCompiler
)
database_cross_reference()
(in
_RecordConsumer
)
delimiter
(in
Martel.test.testformats
)
dna_alphabet
(in
Bio.Restriction._Update.RestrictionCompiler
)
database_cross_reference()
(in
_SequenceConsumer
)
delimiter()
(in
Martel.test.testformats.delimiter
)
DNA_MATRIX
(in
MultipleAlignCL
)
database_info()
(in
_HeaderConsumer
)
delnode()
(in
POMDocument
)
DNAAlphabet
(in
Bio.Alphabet
)
database_length()
(in
_ParametersConsumer
)
Des
(in
Bio.SCOP
)
dnal
(in
Bio.Wise
)
database_name()
(in
Bio.Std
)
Description
(in
Bio.Blast.Record
)
do_alignment()
(in
Bio.Clustalw
)
database_num_letters()
(in
Bio.Std
)
description
(in
run_local_tests
)
do_br()
(in
InterProParser
)
database_num_sequences()
(in
Bio.Std
)
description()
(in
_DescriptionConsumer
)
do_br()
(in
NdbParser
)
database_reference()
(in
_RecordConsumer
)
description()
(in
_RecordConsumer
)
do_crossover()
(in
SafeFitnessCrossover
)
DatabaseDict
(in
Bio.EUtils.Config
)
description()
(in
_RecordConsumer
)
do_crossover()
(in
GeneralPointCrossover
)
DatabaseInfo
(in
Bio.EUtils.Config
)
description()
(in
Bio.Std
)
do_crossover()
(in
UniformCrossover
)
DatabaseLoader
(in
BioSQL.Loader
)
description()
(in
_RecordConsumer
)
do_it()
(in
Bio.EUtils.dtd2py
)
DatabaseRemover
(in
BioSQL.Loader
)
description()
(in
_SequenceConsumer
)
do_not_cut()
(in
Analysis
)
DatabaseReport
(in
Bio.Blast.Record
)
description_block()
(in
Bio.Std
)
do_test()
(in
Martel.test.test_delimiter
)
databases
(in
Bio.EUtils.Config
)
description_header()
(in
_DescriptionConsumer
)
DocSQL
(in
Bio
)
DataHandler
(in
Bio.Entrez.Parser
)
description_line()
(in
Bio.Std
)
DocSum
(in
Bio.EUtils.DTDs.eSummary_020511
)
DataRecord
(in
Bio.Enzyme
)
Descriptor
(in
Bio.EUtils.DTDs.eInfo_020511
)
documentation()
(in
_RecordConsumer
)
Datatypes
(in
Bio.EUtils
)
destroy()
(in
ElementNode
)
Dom
(in
Bio.SCOP
)
Date
(in
Bio.EUtils.Datatypes
)
destroy()
(in
IndentedText
)
Domain
(in
Bio.SCOP
)
date()
(in
_FeatureConsumer
)
destroy_transition()
(in
MarkovModelBuilder
)
domainsClusteredByEv()
(in
Astral
)
date()
(in
_RecordConsumer
)
detach()
(in
ElementNode
)
domainsClusteredById()
(in
Astral
)
date()
(in
_RecordConsumer
)
detach_child()
(in
Entity
)
Dot
date()
(in
_RecordConsumer
)
detach_parent()
(in
Atom
)
DOUBLEQUOTED
(in
MMCIF2Dict
)
date()
(in
_SequenceConsumer
)
detach_parent()
(in
DisorderedEntityWrapper
)
download_entire_pdb()
(in
PDBList
)
DateRange
(in
Bio.EUtils.Datatypes
)
detach_parent()
(in
Entity
)
download_many()
(in
Bio.PubMed
)
db_source()
(in
_FeatureConsumer
)
df_search()
(in
Bio.Pathway.Rep.MultiGraph
)
download_obsolete_entries()
(in
PDBList
)
db_source()
(in
_RecordConsumer
)
diagALL
(in
Bio.SubsMat
)
DR
(in
Martel.test.testformats.swissprot38
)
DbFrom
(in
Bio.EUtils.DTDs.eLink_020511
)
diagNO
(in
Bio.SubsMat
)
DR_block
(in
Martel.test.testformats.swissprot38
)
dbid()
(in
Bio.Std
)
diagONLY
(in
Bio.SubsMat
)
DR_embl
(in
Martel.test.testformats.swissprot38
)
dbids
(in
DBIdsLookup
)
Dice
(in
Bio.PDB
)
DR_general
(in
Martel.test.testformats.swissprot38
)
dbids
(in
CheckLinkSet
)
dictionaries
(in
Bio.Entrez.SerialSet
)
DR_prosite
(in
Martel.test.testformats.swissprot38
)
DBIds
(in
Bio.EUtils.Datatypes
)
Dictionary
(in
Bio.Prosite
)
draw()
(in
Chromosome
)
dbids
(in
LinkSetDb
)
Dictionary
(in
Bio.Prosite.Prodoc
)
draw()
(in
ChromosomeSegment
)
dbids
(in
HistoryLookup
)
Dictionary
(in
Bio.PubMed
)
draw()
(in
Organism
)
DBIdsClient
(in
Bio.EUtils
)
Dictionary
(in
Bio.SwissProt.SProt
)
draw()
(in
_ChromosomeComponent
)
DBIdsClient
(in
Bio.EUtils.DBIdsClient
)
dictionary_match
(in
Bio.pairwise2
)
draw()
(in
BarChartDistribution
)
DBIdsLookup
(in
Bio.EUtils.DBIdsClient
)
DictionaryBuilder
(in
Bio.Restriction._Update.RestrictionCompiler
)
draw()
(in
DistributionPage
)
DBIdsRecord
(in
Bio.EUtils.DBIdsClient
)
DictionaryElement
(in
Bio.Entrez.Parser
)
draw()
(in
LineDistribution
)
DbInfo
(in
Bio.EUtils.DTDs.eInfo_020511
)
DictLookup
(in
Bio.Mindy.BaseDB
)
draw_to_file()
(in
ComparativeScatterPlot
)
dblink()
(in
_FeatureConsumer
)
difference()
(in
HashSet
)
dropoff_1st_pass()
(in
_ParametersConsumer
)
dblink()
(in
_RecordConsumer
)
difference()
(in
Bio.listfns
)
ds
(in
Bio.Sequencing.Ace
)
DbList
(in
Bio.EUtils.DTDs.eInfo_020511
)
DifferentialCutsite
(in
Bio.CAPS
)
ds()
(in
_RecordConsumer
)
DbName
(in
Bio.EUtils.DTDs.eInfo_020511
)
DifferentialSchemaFitness
(in
Bio.NeuralNetwork.Gene.Schema
)
DSSP
(in
Bio.PDB.DSSP'
)
dbname_conversions
(in
Bio.DBXRef
)
DiffseqCommandline
(in
Bio.Emboss.Applications
)
DSSP'
(in
Bio.PDB
)
DBSeq
(in
BioSQL.BioSeq
)
digits
(in
Bio.MetaTool.metatool_format
)
dssp_dict_from_pdb_file()
(in
Bio.PDB.DSSP'
)
DBSeqRecord
(in
BioSQL.BioSeq
)
digits
(in
Bio.Saf.saf_format
)
DT_ann_update
(in
Martel.test.testformats.swissprot38
)
DBServer
(in
BioSQL.BioSeqDatabase
)
DIGITS
(in
Martel.msre_parse
)
DT_created
(in
Martel.test.testformats.swissprot38
)
DbTo
(in
Bio.EUtils.DTDs.eInfo_020511
)
Digits()
(in
Martel
)
DT_seq_update
(in
Martel.test.testformats.swissprot38
)
DbTo
(in
Bio.EUtils.DTDs.eLink_020511
)
dindex_to_1
(in
Bio.PDB.Polypeptide
)
dtd2py
(in
Bio.EUtils
)
DBUtils
(in
BioSQL
)
dindex_to_3
(in
Bio.PDB.Polypeptide
)
dtd_end()
(in
DTDConsumerForSourceGeneration
)
DBXRef
(in
Bio
)
direction2index
(in
Location
)
dtd_start()
(in
DTDConsumerForSourceGeneration
)
DBXRef
(in
Bio.DBXRef
)
direction_and_index()
(in
Location
)
DTDConsumerForSourceGeneration
dbxref()
(in
Bio.Std
)
DirectoryRetriever
(in
Bio.PopGen.Async
)
DTDs
(in
Bio.EUtils
)
dbxref_dbid()
(in
Bio.Std
)
disease()
(in
_RecordConsumer
)
dumb_consensus()
(in
SummaryInfo
)
dbxref_dbname()
(in
Bio.Std
)
DiskFlatDB
(in
Bio.Mindy.FlatDB
)
Dump
(in
Martel.test.support
)
dbxref_negate()
(in
Bio.Std
)
disordered_add()
(in
DisorderedAtom
)
dump()
(in
Query
)
dbxrefs
(in
DBSeqRecord
)
disordered_add()
(in
DisorderedEntityWrapper
)
dump()
(in
SubPattern
)
DE
(in
Martel.test.testformats.swissprot38
)
disordered_add()
(in
DisorderedResidue
)
dump()
(in
Storage
)
DE_block
(in
Martel.test.testformats.swissprot38
)
disordered_get()
(in
DisorderedEntityWrapper
)
dump()
(in
Martel.test.test_swissprot38
)
Debug
disordered_get_id_list()
(in
DisorderedEntityWrapper
)
DUMP_RESULT
(in
Bio.EUtils.ThinClient
)
Decode
(in
Bio
)
disordered_get_list()
(in
DisorderedEntityWrapper
)
dump_saved()
(in
Bio.FilteredReader
)
decode_functions
(in
Bio.Decode
)
disordered_has_id()
(in
DisorderedEntityWrapper
)
DUMP_URL
(in
Bio.EUtils.ThinClient
)
DecodeParser
(in
Bio.Decode
)
disordered_select()
(in
DisorderedEntityWrapper
)
dupe()
(in
Bio.PopGen.SimCoal.Template
)
DecodeScanner
(in
Bio.Decode
)
DisorderedAtom
(in
Bio.PDB.Atom
)
dye()
(in
_RecordConsumer
)
DEFAULT
(in
Bio.EUtils.POM
)
DisorderedEntityWrapper
(in
Bio.PDB.Entity
)
DynamicProgramming
(in
Bio.HMM
)
default()
(in
GenericASTTraversal
)
DisorderedResidue
(in
Bio.PDB.Residue
)
DEFAULT_ALPHABET
(in
Bio.GFF
)
Dispatch
(in
Martel
)
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