Trees
Indices
Help
[
hide private
]
[
frames
] |
no frames
]
Identifier Index
[
A
B
C
D
E
F
G
H
I
J
K
L
M
N
O
P
Q
R
S
T
U
V
W
X
Y
Z
_
]
E
e
(in
Bio.Affy.CelFile
)
end_hsp()
(in
_HSPConsumer
)
ERR_CALL
(in
Bio.distance
)
e
(in
Bio.distance
)
end_hsp()
(in
_PSIBlastConsumer
)
ERR_DEFAULT
(in
Bio.Affy.CelFile
)
easy
(in
Bio.GFF
)
end_hsp()
(in
Handle_hsp
)
ERR_DEFAULT
(in
Bio.distance
)
EConsenseCommandline
(in
Bio.Emboss.Applications
)
end_hsp()
(in
Handle_hsp_seqalign
)
ERR_DEFAULT2
(in
Bio.Affy.CelFile
)
edges()
(in
Graph
)
end_hsp_frame()
(in
Handle_hsp
)
ERR_DEFAULT2
(in
Bio.distance
)
edges()
(in
MultiGraph
)
end_hsp_seqalign_homology_seq()
(in
Handle_hsp_seqalign
)
ERR_IGNORE
(in
Bio.Affy.CelFile
)
efetch()
(in
PublicationDBIdsFetchMixin
)
end_hsp_seqalign_query_leader()
(in
Handle_hsp_seqalign
)
ERR_IGNORE
(in
Bio.distance
)
efetch()
(in
SequenceDBIdsFetchMixin
)
end_hsp_seqalign_query_seq()
(in
Handle_hsp_seqalign
)
ERR_LOG
(in
Bio.Affy.CelFile
)
efetch()
(in
PublicationHistoryFetchMixin
)
end_hsp_seqalign_subject_seq()
(in
Handle_hsp_seqalign
)
ERR_LOG
(in
Bio.distance
)
efetch()
(in
SequenceHistoryFetchMixin
)
end_hsp_value()
(in
Handle_hsp
)
ERR_PRINT
(in
Bio.Affy.CelFile
)
efetch()
(in
Bio.Entrez
)
end_i()
(in
InterProParser
)
ERR_PRINT
(in
Bio.distance
)
efetch_using_dbids()
(in
ThinClient
)
end_i()
(in
NdbParser
)
ERR_RAISE
(in
Bio.Affy.CelFile
)
efetch_using_history()
(in
ThinClient
)
end_kernel
(in
Bio.MetaTool.metatool_format
)
ERR_RAISE
(in
Bio.distance
)
effective_database_length()
(in
_ParametersConsumer
)
end_kernel()
(in
_RecordConsumer
)
ERR_WARN
(in
Bio.Affy.CelFile
)
effective_hsp_length()
(in
_ParametersConsumer
)
end_li()
(in
InterProParser
)
ERR_WARN
(in
Bio.distance
)
effective_query_length()
(in
_ParametersConsumer
)
end_li()
(in
NdbParser
)
ERROR
(in
Bio.EUtils.DTDs.eInfo_020511
)
effective_search_space()
(in
_ParametersConsumer
)
end_not_balanced
(in
Bio.MetaTool.metatool_format
)
ERROR
(in
Bio.EUtils.DTDs.eLink_020511
)
effective_search_space_used()
(in
_ParametersConsumer
)
end_ol()
(in
InterProParser
)
ERROR
(in
Bio.EUtils.DTDs.ePost_020511
)
egquery()
(in
Bio.Entrez
)
end_parameters()
(in
_BlastConsumer
)
ERROR
(in
Bio.EUtils.DTDs.eSearch_020511
)
einfo()
(in
Bio.Entrez
)
end_parameters()
(in
_PSIBlastConsumer
)
ERROR
(in
Bio.EUtils.DTDs.eSummary_020511
)
eInfo_020511
(in
Bio.EUtils.DTDs
)
end_parameters()
(in
_ParametersConsumer
)
ERROR
(in
Problem
)
eInfoResult
(in
Bio.EUtils.DTDs.eInfo_020511
)
end_record()
(in
_Primer3RecordConsumer
)
error
(in
Martel.msre_constants
)
EInvertedCommandline
(in
Bio.Emboss.Applications
)
end_record()
(in
_PrimerSearchRecordConsumer
)
error()
(in
GenericParser
)
element()
(in
LAX
)
end_record()
(in
_RecordConsumer
)
error()
(in
GenericScanner
)
element()
(in
LAXAttrs
)
end_record()
(in
FixDocumentBuilder
)
error()
(in
StoreEvents
)
element()
(in
LAXPositions
)
end_record()
(in
_RecordConsumer
)
error()
(in
Dump
)
elementary_modes_block
(in
Bio.MetaTool.metatool_format
)
end_record()
(in
_RecordConsumer
)
error()
(in
CountErrors
)
elementary_modes_line
(in
Bio.MetaTool.metatool_format
)
end_record()
(in
_RecordConsumer
)
error()
(in
GetErrorPos
)
elementary_modes_tag
(in
Bio.MetaTool.metatool_format
)
end_record()
(in
_RecordConsumer
)
error_message
(in
Query
)
elementary_modes_tag()
(in
_RecordConsumer
)
end_record()
(in
_RecordConsumer
)
ErrorList
(in
Bio.EUtils.DTDs.eSearch_020511
)
elementDecl()
(in
DataHandler
)
end_record()
(in
_SequenceConsumer
)
ErrorProblem
(in
Bio.EUtils.Datatypes
)
ElementInfo
(in
Martel.LAX
)
end_reduced_system
(in
Bio.MetaTool.metatool_format
)
errors
(in
Bio.Entrez.SerialSet
)
ElementNode
end_reduced_system()
(in
_RecordConsumer
)
escape()
(in
Martel.Dispatch
)
elements()
(in
RestrictionBatch
)
end_saf_record()
(in
_RecordConsumer
)
ESCAPES
(in
Martel.msre_parse
)
elink()
(in
DBIdsLookup
)
end_search_header()
(in
Handle_search_header
)
esearch()
(in
ThinClient
)
elink()
(in
HistoryLookup
)
end_search_table()
(in
Handle_search_table
)
esearch()
(in
Bio.Entrez
)
elink()
(in
Bio.Entrez
)
end_search_table_entry()
(in
Handle_search_table
)
eSearch_020511
(in
Bio.EUtils.DTDs
)
eLink_020511
(in
Bio.EUtils.DTDs
)
end_search_table_value()
(in
Handle_search_table
)
eSearchResult
(in
Bio.EUtils.DTDs.eSearch_020511
)
elink_using_dbids()
(in
ThinClient
)
end_sequence()
(in
_RecordConsumer
)
ESeqBootCommandline
(in
Bio.Emboss.Applications
)
elink_using_history()
(in
ThinClient
)
end_sequence()
(in
Handle_sequence
)
espell()
(in
Bio.Entrez
)
eLinkResult
(in
Bio.EUtils.DTDs.eLink_020511
)
end_sequence_block()
(in
Handle_sequence
)
Est2GenomeCommandline
(in
Bio.Emboss.Applications
)
elucidate()
(in
Ambiguous
)
end_stochiometric()
(in
_RecordConsumer
)
estimate_params()
(in
AbstractTrainer
)
elucidate()
(in
Defined
)
end_stoichiometric
(in
Bio.MetaTool.metatool_format
)
esummary()
(in
DBIdsLookup
)
elucidate()
(in
NotDefined
)
end_sub()
(in
NdbParser
)
esummary()
(in
HistoryLookup
)
em
(in
Bio.SeqUtils.ProtParamData
)
end_subsets
(in
Bio.MetaTool.metatool_format
)
esummary()
(in
Bio.Entrez
)
EMAIL
(in
Bio.EUtils.ThinClient
)
end_subsets()
(in
_RecordConsumer
)
eSummary_020511
(in
Bio.EUtils.DTDs
)
email
(in
Bio.Entrez
)
end_td()
(in
InterProParser
)
esummary_using_dbids()
(in
ThinClient
)
embl
(in
Bio.writers.SeqRecord
)
end_ul()
(in
InterProParser
)
esummary_using_history()
(in
ThinClient
)
EmblCdsFeatureIterator()
(in
Bio.SeqIO.InsdcIO
)
end_ul()
(in
NdbParser
)
eSummaryResult
(in
Bio.EUtils.DTDs.eSummary_020511
)
EmblIterator()
(in
Bio.SeqIO.InsdcIO
)
endDocument()
(in
ObjectParserHandler
)
ETandemCommandline
(in
Bio.Emboss.Applications
)
EmblScanner
(in
Bio.GenBank.Scanner
)
endDocument()
(in
EventGenerator
)
euclidean()
(in
Bio.distance
)
Emboss
(in
Bio
)
endDocument()
(in
Dispatcher
)
euclidean_py()
(in
Bio.distance
)
EmbossIO
(in
Bio.AlignIO
)
endDocument()
(in
StoreEvents
)
EUtils
(in
Bio
)
EmbossIterator
(in
Bio.AlignIO.EmbossIO
)
endDocument()
(in
LAX
)
EUtilsError
(in
Bio.EUtils.Datatypes
)
EmbossWriter
(in
Bio.AlignIO.EmbossIO
)
endDocument()
(in
CheckGood
)
EUtilsSearchError
(in
Bio.EUtils.Datatypes
)
EMPTY
(in
Bio.EUtils.POM
)
endDocument()
(in
Dump
)
EventGenerator
(in
Bio.ParserSupport
)
empty
(in
Bio.writers.SeqRecord
)
endElement()
(in
_XMLparser
)
EventStream
(in
Martel.Iterator
)
empty()
(in
HashSet
)
endElement()
(in
ObjectParserHandler
)
Everything
(in
Martel.RecordReader
)
Empty()
(in
Martel
)
endElement()
(in
DataHandler
)
evolve()
(in
GenerationEvolver
)
encode_motif()
(in
Schema
)
endElement()
(in
GrabXPathNodes
)
Evolver
(in
Bio.GA
)
Encodings
(in
Bio
)
endElement()
(in
EventGenerator
)
ExactPosition
(in
Bio.SeqFeature
)
end
(in
Martel.test.testformats.swissprot38
)
endElement()
(in
ConvertHandler
)
ExampleManager
(in
Bio.NeuralNetwork.Training
)
end()
(in
Location
)
endElement()
(in
RecognizeHandler
)
ExclQuery
(in
Bio.EUtils.DTDs.LinkOut
)
end()
(in
PrositeMatch
)
endElement()
(in
Dispatcher
)
excluded_chars
(in
Bio.NBRF.nbrf_format
)
end()
(in
LAX
)
endElement()
(in
StoreEvents
)
exec_template()
(in
Bio.PopGen.SimCoal.Template
)
end_()
(in
Handle_search_info
)
endElement()
(in
LAX
)
execute()
(in
Adaptor
)
end_a()
(in
InterProParser
)
endElement()
(in
Dump
)
execute_and_fetch_col0()
(in
Adaptor
)
end_a()
(in
ExtractUrls
)
endElement()
(in
CatchFields
)
execute_and_fetchall()
(in
Adaptor
)
end_alignment()
(in
_AlignmentConsumer
)
endElement()
(in
Capture
)
execute_one()
(in
Adaptor
)
end_alignment()
(in
_BlastConsumer
)
EndsWith
(in
Martel.RecordReader
)
exp
(in
Bio.Affy.CelFile
)
end_alignment()
(in
_PSIBlastConsumer
)
ENeighborCommandline
(in
Bio.Emboss.Applications
)
exp
(in
Bio.distance
)
end_candidate_line()
(in
_RecordConsumer
)
english_abstract()
(in
_RecordConsumer
)
expand_template()
(in
Martel.msre_parse
)
end_conservation_relations
(in
Bio.MetaTool.metatool_format
)
ENTITIES
ExPASy
(in
Bio
)
end_conservation_relations()
(in
_RecordConsumer
)
ENTITY
ExPASyDictionary
(in
Bio.Prosite
)
end_contig()
(in
_RecordConsumer
)
Entity
(in
Bio.PDB
)
ExPASyDictionary
(in
Bio.Prosite.Prodoc
)
end_convex_basis
(in
Bio.MetaTool.metatool_format
)
Entity
(in
Bio.PDB.Entity
)
ExPASyDictionary
(in
Bio.SwissProt.SProt
)
end_convex_basis()
(in
_RecordConsumer
)
entity_levels
(in
Bio.PDB.Selection
)
expected_records
(in
Martel.test.test_delimiter
)
end_database_report()
(in
_BlastConsumer
)
entitydefs
(in
Bio.EUtils.parse
)
EXPFREQ
(in
Bio.SubsMat
)
end_database_report()
(in
_DatabaseReportConsumer
)
Entrez
(in
Bio
)
Explode
(in
Bio.EUtils.DTDs.eSearch_020511
)
end_database_report()
(in
_PSIBlastConsumer
)
entry_date()
(in
_RecordConsumer
)
expm1
(in
Bio.Affy.CelFile
)
end_dbid()
(in
Handle_dbid
)
entry_month()
(in
_RecordConsumer
)
expm1
(in
Bio.distance
)
end_dbxref()
(in
Handle_dbxref
)
Enumeration
export_fasta()
(in
Nexus
)
end_dbxref_dbid()
(in
Handle_dbxref
)
Enzyme
(in
Bio
)
export_phylip()
(in
Nexus
)
end_dbxref_dbname()
(in
Handle_dbxref
)
Enzyme
(in
Bio.KEGG
)
ExposureCN
(in
Bio.PDB.HSExposure
)
end_description()
(in
Handle_description
)
enzyme
(in
Bio.MetaTool.metatool_format
)
EXPRESS()
(in
_RecordConsumer
)
end_description_block()
(in
Handle_description
)
enzyme()
(in
_RecordConsumer
)
Expression
(in
Bio.EUtils.Datatypes
)
end_descriptions()
(in
_BlastConsumer
)
enzymedict
(in
Bio.Restriction._Update.RestrictionCompiler
)
Expression
(in
Martel
)
end_descriptions()
(in
_DescriptionConsumer
)
EnzymeRecord
(in
Bio.Enzyme
)
Expression
end_descriptions()
(in
_PSIBlastConsumer
)
enzymes_block
(in
Bio.MetaTool.metatool_format
)
ExpressionList
end_elementary_modes
(in
Bio.MetaTool.metatool_format
)
enzymes_header
(in
Bio.MetaTool.metatool_format
)
extend()
(in
ElementNode
)
end_elementary_modes()
(in
_RecordConsumer
)
enzymes_list
(in
Bio.MetaTool.metatool_format
)
extend()
(in
SeqMap
)
end_fast_dbxref()
(in
Handle_dbxref
)
Eof()
(in
Martel
)
extend()
(in
MutableSeq
)
end_feature()
(in
Handle_feature_location
)
Eol()
(in
Martel
)
extended_dna
(in
Bio.Alphabet.IUPAC
)
end_feature()
(in
Handle_features
)
epost()
(in
ThinClient
)
extended_dna_letters
(in
Bio.Data.IUPACData
)
end_feature_block()
(in
Handle_features
)
epost()
(in
Bio.Entrez
)
extended_protein
(in
Bio.Alphabet.IUPAC
)
end_feature_description()
(in
Handle_features
)
ePost_020511
(in
Bio.EUtils.DTDs
)
extended_protein_letters
(in
Bio.Data.IUPACData
)
end_feature_location()
(in
Handle_feature_location
)
ePostResult
(in
Bio.EUtils.DTDs.ePost_020511
)
extended_protein_values
(in
Bio.Data.IUPACData
)
end_feature_qualifier()
(in
Handle_feature_qualifier
)
EProtDistCommandline
(in
Bio.Emboss.Applications
)
extended_protein_weight_ranges
(in
Bio.Data.IUPACData
)
end_feature_qualifier_description()
(in
Handle_feature_qualifier
)
EProtParsCommandline
(in
Bio.Emboss.Applications
)
ExtendedIUPACDNA
(in
Bio.Alphabet.IUPAC
)
end_h1()
(in
NdbParser
)
EPSILON
(in
Bio.SubsMat
)
ExtendedIUPACProtein
(in
Bio.Alphabet.IUPAC
)
end_h2()
(in
InterProParser
)
equal
(in
Bio.Affy.CelFile
)
external_entity_ref_handler()
(in
DataHandler
)
end_h2()
(in
NdbParser
)
equal
(in
Bio.distance
)
extract()
(in
Bio.PDB.Dice
)
end_header()
(in
_BlastConsumer
)
equal_weight()
(in
Bio.kNN
)
extract_keywords()
(in
Bio.SwissProt.KeyWList
)
end_header()
(in
_HeaderConsumer
)
equischizomers()
(in
AbstractCut
)
extract_urls()
(in
ExtractUrls
)
end_header()
(in
_PSIBlastConsumer
)
equiv_title
(in
Bio.FSSP
)
ExtractUrls
(in
Bio.NetCatch
)
end_hsp()
(in
_BlastConsumer
)
ERR_CALL
(in
Bio.Affy.CelFile
)
EZRetrieve
(in
Bio
)
Trees
Indices
Help
Generated by Epydoc 3.0.1 on Thu Dec 25 10:43:24 2008
http://epydoc.sourceforge.net