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Deals with contructing the Structure object. The StructureBuilder class is used by the PDBParser classes to translate a file to a Structure object.
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The line counter keeps track of the line in the PDB file that is being parsed. Arguments: o line_counter - int |
Initiate a new Structure object with given id. Arguments: o id - string |
Initiate a new Model object with given id. Arguments: o id - int |
Initiate a new Chain object with given id. Arguments: o chain_id - string |
Flag a change in segid. Arguments: o segid - string |
Initiate a new Residue object. Arguments: o resname - string, e.g. "ASN" o field - hetero flag, "W" for waters, "H" for hetero residues, otherwise blanc. o resseq - int, sequence identifier o icode - string, insertion code |
Initiate a new Atom object. Arguments: o name - string, atom name, e.g. CA, spaces should be stripped o coord - Numeric array (Float0, size 3), atomic coordinates o b_factor - float, B factor o occupancy - float o altloc - string, alternative location specifier o fullname - string, atom name including spaces, e.g. " CA " |
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