Trees | Indices | Help |
---|
|
Use the DSSP program to calculate secondary structure and accessibility. You need to have a working version of DSSP (and a license, free for academic use) in order to use this. For DSSP, see http://www.cmbi.kun.nl/gv/dssp/.
The DSSP codes for secondary structure used here are:
|
|||
DSSP Run DSSP on a pdb file, and provide a handle to the DSSP secondary structure and accessibility. |
|
|||
{} |
|
||
|
|||
|
|
|||
MAX_ACC =
|
|||
__package__ =
|
|||
_dssp_cys = re.compile(r'
|
|||
standard_aa_names =
|
|||
to_one_letter_code =
|
|
Create a DSSP dictionary from a PDB file. Example: >>> dssp_dict=dssp_dict_from_pdb_file("1fat.pdb") >>> aa, ss, acc=dssp_dict[('A', 1)]
|
Return a DSSP dictionary that maps (chainid, resid) to aa, ss and accessibility, from a DSSP file.
|
Secondary structure symbol to index. H=0 E=1 C=2 |
|
MAX_ACC
|
standard_aa_names
|
to_one_letter_code
|
Trees | Indices | Help |
---|
Generated by Epydoc 3.0.1 on Thu Dec 25 10:43:32 2008 | http://epydoc.sourceforge.net |