Package Bio :: Package AlignIO :: Module StockholmIO
[hide private]
[frames] | no frames]

Module StockholmIO

source code

Bio.AlignIO support for the "stockholm" format (used in the PFAM database).

You are expected to use this module via the Bio.AlignIO functions (or the Bio.SeqIO functions if you want to work directly with the gapped sequences).

Classes [hide private]
  StockholmWriter
Stockholm/PFAM alignment writer.
  StockholmIterator
Loads a Stockholm file from PFAM into Alignment objects.
Variables [hide private]
  __package__ = 'Bio.AlignIO'