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SequenceSet Class Reference

Set of Sequence objects. More...

#include <seqpp/SequenceSet.h>

Inheritance diagram for SequenceSet:

PrimarySequenceSet< Sequence > PrimaryCount List of all members.

Public Member Functions

 SequenceSet (const string &seq_list_file, const string &alpha_file, short order, int nbseq=BUFFERSEQ)
 constructor with a alphabet-needed file
 SequenceSet (const string &seq_list_file, short mode, const string &line2parse, bool case_sensitivity, short order, int nbseq=BUFFERSEQ)
 constructor with a alphabet-needed line2parse

Detailed Description

Set of Sequence objects.

from :


Constructor & Destructor Documentation

SequenceSet::SequenceSet const string &  seq_list_file,
const string &  alpha_file,
short  order,
int  nbseq = BUFFERSEQ
 

constructor with a alphabet-needed file

Parameters:
seq_list_file file, among the 3 possibilities of files.
alpha_file file for initializing the alphabet (see Translator doc)
order Markovian order,
nbseq number of sequences

SequenceSet::SequenceSet const string &  seq_list_file,
short  mode,
const string &  line2parse,
bool  case_sensitivity,
short  order,
int  nbseq = BUFFERSEQ
 

constructor with a alphabet-needed line2parse

Parameters:
seq_list_file file, among the 3 possibilities of files.
mode number of char for a token in the alphabet
line2parse string for initializing the alphabet (see Translator doc)
case_sensitivity true for being case sensitive
order Markovian order,
nbseq number of sequences


The documentation for this class was generated from the following files:



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