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Version 4.0.0 |
#include <seqpp/PhasedVLMarkov.h>
Inheritance diagram for PhasedVLMarkov:
Public Member Functions | |
template<class TSeq> | |
PhasedVLMarkov (const TSeq &tseq, vector< double > &init, double cutoff, short phase, short initial_phase=0) | |
Constructor 1 from a SequenceSet or a Sequence. | |
template<class TSeq> | |
PhasedVLMarkov (const TSeq &tseq, double cutoff, short phase, short initial_phase=0) | |
Constructor 2 from a SequenceSet or a Sequence with random init. | |
~PhasedVLMarkov () | |
destructor | |
Protected Attributes | |
vlm_tree * | _vlmtree |
Variable Length Context Trees. |
PhasedVLMarkov is a PhasedMarkov object with a different estimation step. This object performs the estimation with the Variable Length Markov algorithm and then transfoms, once per phase, the variable length context tree in a markovian matrix. One difference is that a cutoff is required for the selection of the tree.
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Constructor 1 from a SequenceSet or a Sequence.
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Constructor 2 from a SequenceSet or a Sequence with random init.
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Contributors : M.Baudry, P.Y.Bourguignon, M.Hoebeke, V.Miele, P.Nicolas, G.Nuel, H.Richard, D.Robelin |