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const.h File Reference

Configuration file. More...

Go to the source code of this file.

Namespaces

namespace  seqplusplus_space

Variables

const int BUFFERSEQ = 100
 for SequenceSet, number of sequence per buffer
const int LGBLOC = 1000
 for Sequence,length of a bloc used to memory the sequence
const char SKIPCHAR = '>'
 for Sequence, character definig the line to skip on top of a sequence (cf. fasta file)
const char INVCHAR = '?'
 for Translator, for invalid declaration file
const char COMCHAR = '#'
 comments characters
const char LABPATT [3] = "->"
 label prefix before a declaration
const char LABINV [4] = "INV"
 invalid label
const int LGSTRING = 256
 string name max length
const int LG_FILENAME = 200
 file name max length
const int STREAM_PRECISION = 8
 precision for the o/ofstream
const double PRECISION = 1e-7
 precision for comparing a double to 0, must be = 1e-(STREAM_PRECISION-1)
const double EPS = 1e-5
 for MTD E.M. Algorithm
const short DEBUG = 0
 debug level, for the compilation


Detailed Description

Configuration file.

Author:
Vincent Miele
12/2003



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