Version 4.0.0
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~
- a -
AIC() :
PhasedMarkov
- b -
BIC() :
PhasedMarkov
bound_prefixed() :
Coder
- c -
char_to_int() :
Translator
clear() :
Coder
clear_count() :
PrimaryCount
Coder() :
Coder
complementary_char() :
Translator
complementary_char_to_int() :
Translator
complementary_coded_int() :
Translator
complementary_int() :
Translator
complementary_int_to_str() :
Translator
complementary_str() :
Translator
complementary_str_to_int() :
Translator
complementary_strw() :
Translator
compute_count() :
Sequence
,
PrimaryCount
compute_init_law() :
PhasedMarkov
compute_power() :
Markov
compute_rank() :
PhasedMarkov
,
Markov
compute_stat_law() :
Markov
compute_stat_laws() :
PhasedMarkov
count_occurencies() :
PrimaryCount
count_p_occurencies() :
PrimaryCount
- d -
draw_markov_matrices() :
PhasedMarkov
draw_markov_matrix() :
Markov
- e -
empty() :
Coder
erase_back() :
Coder
erase_front() :
Coder
estimate() :
PMarkov
,
PhasedPMarkov
,
PhasedMTDMarkov
,
PhasedMarkov
,
MTDMarkov
,
Markov
- f -
free_markov_matrices() :
PhasedMarkov
free_markov_matrix() :
Markov
free_power() :
Markov
free_stat_law() :
Markov
free_stat_laws() :
PhasedMarkov
- g -
get_code() :
Sequence
get_coder() :
PrimaryCount
get_count() :
PrimaryCount
get_jump() :
PrimaryCount
,
Coder
get_p_count() :
PrimaryCount
get_sequence() :
PrimarySequenceSet< TSequence >
get_synonymous() :
Partition
get_translator() :
PrimarySequenceSet< TSequence >
- i -
init() :
Coder
init_count() :
PrimaryCount
int_to_char() :
Translator
int_to_label() :
Translator
int_to_str() :
Translator
is_complementary_ok() :
Translator
is_count_ok() :
PrimaryCount
is_label_ok() :
Translator
isInvalid() :
Translator
isMu() :
Markov
isMus() :
PhasedMarkov
isNextPhase() :
PhasedMarkov
isPi() :
Markov
isPis() :
PhasedMarkov
isPow() :
Markov
isPrevPhase() :
PhasedMarkov
- l -
length() :
Coder
link_to_translator() :
PhasedMarkov
list_possible_elements() :
Partition
list_suffixed() :
Coder
log_likelihood() :
PhasedMarkov
log_ratio_likelihood() :
PhasedMarkov
- m -
Markov() :
Markov
markov_matrices() :
PhasedMarkov
markov_matrix() :
PhasedMarkov
,
Markov
MTDMarkov() :
MTDMarkov
Mu() :
PhasedMarkov
,
Markov
- n -
nb_parameters() :
PhasedMarkov
nextPhase() :
PhasedMarkov
nMu() :
PhasedMarkov
nPi() :
PhasedMarkov
null_count() :
PrimaryCount
- o -
operator()() :
PrimarySequenceSet< TSequence >
,
PhasedMarkov
,
Markov
- p -
Partition() :
Partition
PhasedMarkov() :
PhasedMarkov
PhasedMTDMarkov() :
PhasedMTDMarkov
PhasedPMarkov() :
PhasedPMarkov
PhasedVLMarkov() :
PhasedVLMarkov
Pi() :
PhasedMarkov
PMarkov() :
PMarkov
pop_back() :
Coder
pop_front() :
Coder
prevPhase() :
PhasedMarkov
PrimarySequenceSet() :
PrimarySequenceSet< TSequence >
print() :
PrimarySequence
,
PhasedMarkov
proba() :
PhasedMarkov
proba_c() :
PhasedMarkov
proba_step() :
Markov
push_back() :
Coder
push_front() :
Coder
- r -
ref_translator() :
PrimarySequence
restrict_init() :
Coder
- s -
seq() :
Sequence
Sequence() :
Sequence
SequenceSet() :
SequenceSet
set_pos() :
PrimarySequence
simule() :
Sequence
simule_phased() :
Sequence
stat_law() :
PhasedMarkov
,
Markov
Stochasticity() :
PhasedMarkov
str_to_int() :
Translator
strw_to_coded_int() :
Translator
strw_to_vect() :
Translator
- t -
tell_alphabet_mode() :
Translator
tell_alphabet_size() :
Translator
,
PrimarySequenceSet< TSequence >
,
PrimarySequence
tell_code() :
Sequence
tell_file_name() :
PrimarySequenceSet< TSequence >
,
PrimarySequence
tell_int() :
Sequence
,
PrimarySequence
tell_int_compl() :
PrimarySequence
tell_jump() :
PrimaryCount
,
Coder
tell_label() :
PrimarySequence
tell_labels() :
PrimarySequence
tell_length() :
PrimarySequenceSet< TSequence >
,
PrimarySequence
tell_length_max() :
PrimarySequenceSet< TSequence >
tell_length_seq() :
PrimarySequenceSet< TSequence >
tell_max_count() :
Sequence
,
PrimaryCount
tell_nb_inv() :
Translator
,
PrimarySequenceSet< TSequence >
,
PrimarySequence
tell_nb_sequence() :
PrimarySequenceSet< TSequence >
tell_nb_value() :
PrimaryCount
tell_nbposs() :
Partition
tell_nbvalue() :
Coder
tell_occurencies() :
PrimaryCount
tell_order() :
PrimaryCount
,
PhasedMarkov
tell_p_occurencies() :
PrimaryCount
tell_pattern() :
PrimarySequence
tell_pattern_compl() :
PrimarySequence
tell_patterns() :
PrimarySequence
tell_phase() :
PrimaryCount
,
PhasedMarkov
tell_pos() :
PrimarySequence
tell_rank() :
PhasedMarkov
tell_seq_name() :
PrimarySequenceSet< TSequence >
,
PrimarySequence
tell_size() :
PhasedMarkov
,
Partition
total_variation() :
PhasedMarkov
Translator() :
Translator
- v -
vect_to_labelstrw() :
Translator
vect_to_strw() :
Translator
vect_to_word() :
Translator
virtual_push_back() :
Coder
virtual_push_front() :
Coder
VLMarkov() :
VLMarkov
- w -
weight_matrix() :
PrimarySequenceSet< TSequence >
word_to_coded_int() :
Translator
word_to_vect() :
Translator
- ~ -
~Coder() :
Coder
~Markov() :
Markov
~MTDMarkov() :
MTDMarkov
~Partition() :
Partition
~PhasedMarkov() :
PhasedMarkov
~PhasedMTDMarkov() :
PhasedMTDMarkov
~PhasedPMarkov() :
PhasedPMarkov
~PhasedVLMarkov() :
PhasedVLMarkov
~PrimaryCount() :
PrimaryCount
~PrimarySequence() :
PrimarySequence
~PrimarySequenceSet() :
PrimarySequenceSet< TSequence >
~Sequence() :
Sequence
~Translator() :
Translator
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Contributors : M.Baudry, P.Y.Bourguignon, M.Hoebeke, V.Miele, P.Nicolas, G.Nuel, H.Richard, D.Robelin
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