Package Bio :: Package expressions :: Module transfac
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Module Bio.expressions.transfac

A Martel format to parse the output from transfac.

Formats: format Format for a whole file.
Function Summary
  SS(exp)

Variable Summary
Seq blank_line = <Martel.Expression.Seq instance at 0xb701c4...
Seq DATA_LINE = <Martel.Expression.Seq instance at 0xb6fe620...
Seq format = <Martel.Expression.Seq instance at 0xb6fe672c>
Seq FOUND_SITES_LINE = <Martel.Expression.Seq instance at 0x...
Seq MATRIX_LINE = <Martel.Expression.Seq instance at 0xb6fdc...
Seq PROFILE_LINE = <Martel.Expression.Seq instance at 0xb6fd...
Seq SEQUENCE_LINE = <Martel.Expression.Seq instance at 0xb6f...
Seq SEQUENCES_LENGTH_LINE = <Martel.Expression.Seq instance ...
Seq SITE_FREQUENCY_LINE = <Martel.Expression.Seq instance at...
Seq TITLE_LINE = <Martel.Expression.Seq instance at 0xb6fdcf...

Variable Details

blank_line

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb701c46c>                         

DATA_LINE

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb6fe620c>                         

format

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb6fe672c>                         

FOUND_SITES_LINE

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb6fe650c>                         

MATRIX_LINE

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb6fdc48c>                         

PROFILE_LINE

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb6fdc96c>                         

SEQUENCE_LINE

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb6fdc66c>                         

SEQUENCES_LENGTH_LINE

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb6fe634c>                         

SITE_FREQUENCY_LINE

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb6fe67ac>                         

TITLE_LINE

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb6fdcfac>                         

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