Package Bio :: Module Seq :: Class Seq
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Class Seq


Method Summary
  __init__(self, data, alphabet)
  __add__(self, other)
  __getitem__(self, i)
  __getslice__(self, i, j)
  __len__(self)
  __radd__(self, other)
  __repr__(self)
  __str__(self)
  complement(self)
Returns the complement sequence.
  count(self, item)
  reverse_complement(self)
Returns the reverse complement sequence.
  tomutable(self)
  tostring(self)
  __maketrans(self, alphabet)
Seq.__maketrans(alphabet) -> translation table.

Method Details

complement(self)

Returns the complement sequence. New Seq object.

reverse_complement(self)

Returns the reverse complement sequence. new Seq object.

__maketrans(self, alphabet)

Seq.__maketrans(alphabet) -> translation table.

Return a translation table for use with complement() and reverse_complement().

Compatible with lower case and upper case sequences.

alphabet is a dictionary as implement in Data.IUPACData

For internal use only.

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