Package Bio :: Package expressions :: Package blast :: Module wublast
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Module Bio.expressions.blast.wublast

Function Summary
  main(outf)

Variable Summary
Group blastn = <Martel.Expression.Group instance at 0xb71052ac...
Seq blastn_appheader = <Martel.Expression.Seq instance at 0x...
Seq blastn_ending = <Martel.Expression.Seq instance at 0xb71...
Seq blastn_hsp_header = <Martel.Expression.Seq instance at 0...
Seq blastn_identities = <Martel.Expression.Seq instance at 0...
Seq blastn_score = <Martel.Expression.Seq instance at 0xb716...
Seq blastn_strand = <Martel.Expression.Seq instance at 0xb71...
Group blastp = <Martel.Expression.Group instance at 0xb70df84c...
Seq blastp_appheader = <Martel.Expression.Seq instance at 0x...
Seq blastp_ending = <Martel.Expression.Seq instance at 0xb71...
Seq blastp_hsp_header = <Martel.Expression.Seq instance at 0...
Seq blastp_score = <Martel.Expression.Seq instance at 0xb716...
Group blastx = <Martel.Expression.Group instance at 0xb70aa34c...
Seq blastx_appheader = <Martel.Expression.Seq instance at 0x...
Seq blastx_ending = <Martel.Expression.Seq instance at 0xb71...
Seq blastx_hsp_header = <Martel.Expression.Seq instance at 0...
Seq blastx_identities = <Martel.Expression.Seq instance at 0...
Seq blastx_score = <Martel.Expression.Seq instance at 0xb716...
Seq blastx_strand = <Martel.Expression.Seq instance at 0xb71...
Seq blastx_table_entry = <Martel.Expression.Seq instance at ...
Seq blastx_to_database = <Martel.Expression.Seq instance at ...
Seq ending = <Martel.Expression.Seq instance at 0xb712bb6c>
Seq ending_start = <Martel.Expression.Seq instance at 0xb718...
Group format = <Martel.Expression.Group instance at 0xb713c96c...
Group header = <Martel.Expression.Group instance at 0xb7172a8c...
Seq hit_descr = <Martel.Expression.Seq instance at 0xb7238ac...
Seq hit_length = <Martel.Expression.Seq instance at 0xb72387...
Seq identities = <Martel.Expression.Seq instance at 0xb717b2...
MaxRepeat parameters = <Martel.Expression.MaxRepeat instance at 0x...
Seq query_database = <Martel.Expression.Seq instance at 0xb7...
Seq spaces_line = <Martel.Expression.Seq instance at 0xb71dd...
Seq statistics = <Martel.Expression.Seq instance at 0xb712bb...
Seq table_entry = <Martel.Expression.Seq instance at 0xb7164...
Group tblastn = <Martel.Expression.Group instance at 0xb70c988...
Seq tblastn_appheader = <Martel.Expression.Seq instance at 0...
Seq tblastn_hsp_header = <Martel.Expression.Seq instance at ...
Seq tblastn_identities = <Martel.Expression.Seq instance at ...
Seq tblastn_score = <Martel.Expression.Seq instance at 0xb71...
Seq tblastn_strand = <Martel.Expression.Seq instance at 0xb7...
Seq tblastx_appheader = <Martel.Expression.Seq instance at 0...
Seq timestamp = <Martel.Expression.Seq instance at 0xb7127dc...
Seq to_table = <Martel.Expression.Seq instance at 0xb71640cc...
Seq wublast_version = <Martel.Expression.Seq instance at 0xb...

Variable Details

blastn

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb71052ac>                       

blastn_appheader

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb71db1ac>                         

blastn_ending

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb712bbac>                         

blastn_hsp_header

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb717bc6c>                         

blastn_identities

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb717bc2c>                         

blastn_score

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb716accc>                         

blastn_strand

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb717b30c>                         

blastp

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb70df84c>                       

blastp_appheader

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb7159bcc>                         

blastp_ending

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb712bb8c>                         

blastp_hsp_header

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb717b0cc>                         

blastp_score

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb716accc>                         

blastx

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb70aa34c>                       

blastx_appheader

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb7159a6c>                         

blastx_ending

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb712bbcc>                         

blastx_hsp_header

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb71880ec>                         

blastx_identities

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb7181fcc>                         

blastx_score

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb716accc>                         

blastx_strand

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb717b30c>                         

blastx_table_entry

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb718106c>                         

blastx_to_database

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb71815ec>                         

ending

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb712bb6c>                         

ending_start

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb7188cec>                         

format

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb713c96c>                       

header

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb7172a8c>                       

hit_descr

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb7238acc>                         

hit_length

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb723870c>                         

identities

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb717b2cc>                         

parameters

Type:
MaxRepeat
Value:
<Martel.Expression.MaxRepeat instance at 0xb7188dcc>                   

query_database

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb7177e6c>                         

spaces_line

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb71ddacc>                         

statistics

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb712bb4c>                         

table_entry

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb716444c>                         

tblastn

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb70c988c>                       

tblastn_appheader

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb717788c>                         

tblastn_hsp_header

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb7188a4c>                         

tblastn_identities

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb7188a0c>                         

tblastn_score

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb716accc>                         

tblastn_strand

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb718812c>                         

tblastx_appheader

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb7177a2c>                         

timestamp

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb7127dcc>                         

to_table

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb71640cc>                         

wublast_version

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb71db80c>                         

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