Package Bio :: Package Blast :: Module NCBIStandalone :: Class _ParametersConsumer
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Class _ParametersConsumer

Known Subclasses:
_BlastConsumer, _PSIBlastConsumer

Method Summary
  blast_cutoff(self, line)
  database_length(self, line)
  dropoff_1st_pass(self, line)
  effective_database_length(self, line)
  effective_hsp_length(self, line)
  effective_query_length(self, line)
  effective_search_space(self, line)
  effective_search_space_used(self, line)
  end_parameters(self)
  frameshift(self, line)
  gap_penalties(self, line)
  gap_trigger(self, line)
  gap_x_dropoff(self, line)
  gap_x_dropoff_final(self, line)
  hsps_gapped(self, line)
  hsps_no_gap(self, line)
  hsps_prelim_gapped(self, line)
  hsps_prelim_gapped_attempted(self, line)
  matrix(self, line)
  num_extends(self, line)
  num_good_extends(self, line)
  num_hits(self, line)
  num_seqs_better_e(self, line)
  num_sequences(self, line)
  query_length(self, line)
  start_parameters(self)
  threshold(self, line)
  window_size(self, line)

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