Package Bio :: Package expressions :: Package blast :: Module ncbiblast
[show private | hide private]
[frames | no frames]

Module Bio.expressions.blast.ncbiblast

Function Summary
  float_param(name)
  float_stat(name)
  int_param(name, signed, comma)
  int_stat(name, signed, comma)
  Number(name, attrs)

Variable Summary
Seq a_info = <Martel.Expression.Seq instance at 0xb71f134c>
Group alignment = <Martel.Expression.Group instance at 0xb71a0...
Alt blast_filter = <Martel.Expression.Alt instance at 0xb71d...
Group blastn = <Martel.Expression.Group instance at 0xb720c56c...
Seq blastn_appheader = <Martel.Expression.Seq instance at 0x...
Seq blastn_ending = <Martel.Expression.Seq instance at 0xb71...
Seq blastn_hsp_header = <Martel.Expression.Seq instance at 0...
Seq blastn_identical = <Martel.Expression.Seq instance at 0x...
Group blastp = <Martel.Expression.Group instance at 0xb71ae2ac...
Seq blastp_appheader = <Martel.Expression.Seq instance at 0x...
Seq blastp_ending = <Martel.Expression.Seq instance at 0xb71...
Seq blastp_hsp_header = <Martel.Expression.Seq instance at 0...
Seq blastp_identical = <Martel.Expression.Seq instance at 0x...
Group blastx = <Martel.Expression.Group instance at 0xb71b9fcc...
Seq blastx_appheader = <Martel.Expression.Seq instance at 0x...
Seq blastx_ending = <Martel.Expression.Seq instance at 0xb71...
Seq blastx_hsp_header = <Martel.Expression.Seq instance at 0...
Seq db_stats = <Martel.Expression.Seq instance at 0xb71a0a6c...
Group expect = <Martel.Expression.Group instance at 0xb7238b4c...
Group format = <Martel.Expression.Group instance at 0xb71fc68c...
Seq frame = <Martel.Expression.Seq instance at 0xb72438ac>
Seq frameshift_info = <Martel.Expression.Seq instance at 0xb...
Seq gap_penalties_stats = <Martel.Expression.Seq instance at...
Seq gapped_lambda_stats = <Martel.Expression.Seq instance at...
Seq generic_info1 = <Martel.Expression.Seq instance at 0xb71...
Seq generic_info2 = <Martel.Expression.Seq instance at 0xb71...
Group header = <Martel.Expression.Group instance at 0xb72385cc...
Group hit = <Martel.Expression.Group instance at 0xb71a07cc>
Seq hit_descr = <Martel.Expression.Seq instance at 0xb7238ac...
Seq hit_length = <Martel.Expression.Seq instance at 0xb72387...
Seq homology_line = <Martel.Expression.Seq instance at 0xb71...
Group hsp = <Martel.Expression.Group instance at 0xb71a078c>
Seq hsp_info = <Martel.Expression.Seq instance at 0xb71eb94c...
Group hsp_length = <Martel.Expression.Group instance at 0xb723...
Seq lambda_stats = <Martel.Expression.Seq instance at 0xb725...
Seq matrix_stats = <Martel.Expression.Seq instance at 0xb725...
Group ncbi_version = <Martel.Expression.Group instance at 0xb7...
Group num_bits = <Martel.Expression.Group instance at 0xb7238b...
Group num_identical = <Martel.Expression.Group instance at 0xb...
Group num_positives = <Martel.Expression.Group instance at 0xb...
Seq query_database = <Martel.Expression.Seq instance at 0xb7...
Group query_descr = <Martel.Expression.Group instance at 0xb71...
Seq query_letters = <Martel.Expression.Seq instance at 0xb71...
Seq query_line = <Martel.Expression.Seq instance at 0xb71a01...
Seq s1_info = <Martel.Expression.Seq instance at 0xb71f6a0c>
Seq s2_info = <Martel.Expression.Seq instance at 0xb71fc0ec>
Seq score = <Martel.Expression.Seq instance at 0xb723e5ac>
Seq spaces_line = <Martel.Expression.Seq instance at 0xb71dd...
Seq strand = <Martel.Expression.Seq instance at 0xb7243dcc>
Seq subject_line = <Martel.Expression.Seq instance at 0xb71a...
Seq t_info = <Martel.Expression.Seq instance at 0xb71ebe8c>
Group table = <Martel.Expression.Group instance at 0xb7231b0c>
Group table_entry = <Martel.Expression.Group instance at 0xb72...
Group tblastn = <Martel.Expression.Group instance at 0xb71c9d0...
Seq tblastn_appheader = <Martel.Expression.Seq instance at 0...
Seq tblastn_ending = <Martel.Expression.Seq instance at 0xb7...
Seq tblastn_hsp_header = <Martel.Expression.Seq instance at ...
Seq tblastn_score = <Martel.Expression.Seq instance at 0xb72...
Group tblastx = <Martel.Expression.Group instance at 0xb7159a4...
Seq tblastx_appheader = <Martel.Expression.Seq instance at 0...
Seq tblastx_ending = <Martel.Expression.Seq instance at 0xb7...
Seq tblastx_frame = <Martel.Expression.Seq instance at 0xb72...
Seq tblastx_hsp_header = <Martel.Expression.Seq instance at ...
Group to_table = <Martel.Expression.Group instance at 0xb72317...
Seq ungapped_lambda_stats = <Martel.Expression.Seq instance ...
Seq x1_info = <Martel.Expression.Seq instance at 0xb71f15ac>
Seq x2_info = <Martel.Expression.Seq instance at 0xb71f1c6c>
Seq x3_info = <Martel.Expression.Seq instance at 0xb71f634c>

Variable Details

a_info

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb71f134c>                         

alignment

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb71a068c>                       

blast_filter

Type:
Alt
Value:
<Martel.Expression.Alt instance at 0xb71dbf0c>                         

blastn

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb720c56c>                       

blastn_appheader

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb7229ccc>                         

blastn_ending

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb71fc12c>                         

blastn_hsp_header

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb71a05ec>                         

blastn_identical

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb723eccc>                         

blastp

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb71ae2ac>                       

blastp_appheader

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb7229e0c>                         

blastp_ending

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb71fc14c>                         

blastp_hsp_header

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb71a060c>                         

blastp_identical

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb723ec2c>                         

blastx

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb71b9fcc>                       

blastx_appheader

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb7229f2c>                         

blastx_ending

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb71fc1ac>                         

blastx_hsp_header

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb71a04ec>                         

db_stats

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb71a0a6c>                         

expect

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb7238b4c>                       

format

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb71fc68c>                       

frame

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb72438ac>                         

frameshift_info

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb71ebd4c>                         

gap_penalties_stats

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb7255e2c>                         

gapped_lambda_stats

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb725172c>                         

generic_info1

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb71eb08c>                         

generic_info2

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb71eb6ac>                         

header

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb72385cc>                       

hit

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb71a07cc>                       

hit_descr

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb7238acc>                         

hit_length

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb723870c>                         

homology_line

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb71a026c>                         

hsp

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb71a078c>                       

hsp_info

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb71eb94c>                         

hsp_length

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb7238c4c>                       

lambda_stats

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb725528c>                         

matrix_stats

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb725576c>                         

ncbi_version

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb71db2ac>                       

num_bits

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb7238b0c>                       

num_identical

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb7238bcc>                       

num_positives

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb7238cac>                       

query_database

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb723156c>                         

query_descr

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb71dfd2c>                       

query_letters

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb71dfcec>                         

query_line

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb71a010c>                         

s1_info

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb71f6a0c>                         

s2_info

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb71fc0ec>                         

score

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb723e5ac>                         

spaces_line

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb71ddacc>                         

strand

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb7243dcc>                         

subject_line

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb71a054c>                         

t_info

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb71ebe8c>                         

table

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb7231b0c>                       

table_entry

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb7231aec>                       

tblastn

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb71c9d0c>                       

tblastn_appheader

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb71dfa0c>                         

tblastn_ending

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb71fc1ac>                         

tblastn_hsp_header

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb71a062c>                         

tblastn_score

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb723e76c>                         

tblastx

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb7159a4c>                       

tblastx_appheader

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb71dfb2c>                         

tblastx_ending

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb71fc16c>                         

tblastx_frame

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb72439cc>                         

tblastx_hsp_header

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb71a066c>                         

to_table

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb723176c>                       

ungapped_lambda_stats

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb71a0b6c>                         

x1_info

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb71f15ac>                         

x2_info

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb71f1c6c>                         

x3_info

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb71f634c>                         

Generated by Epydoc 2.1 on Thu Mar 31 20:15:52 2005 http://epydoc.sf.net