Package Bio.Compass
Code to deal with COMPASS output, a program for profile/profile
comparison.
Compass is described in:
Sadreyev R, Grishin N. COMPASS: a tool for comparison of multiple
protein alignments with assessment of statistical significance. J Mol
Biol. 2003 Feb 7;326(1):317-36.
Tested with COMPASS 1.24.
Classes: Record One result of a compass file _Scanner Scan compass
results _Consumer Consume scanner events RecordParser Parse one compass
record Iterator Iterate through a number of compass records
Classes |
Iterator |
Iterate through a file of compass results |
Record |
Hold information from one compass hit. |
RecordParser |
Parses compass results into a Record object. |
_Consumer |
|
_Scanner |
Reads compass output and generate events |