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Package Bio :: Package expressions :: Package blast :: Module ncbiblast |
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Function Summary | |
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float_param(name)
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float_stat(name)
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int_param(name,
signed,
comma)
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int_stat(name,
signed,
comma)
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Number(name,
attrs)
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_bit_info(s,
name)
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_num_stat(name,
signed,
comma)
| |
_nv(s,
expr)
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Variable Summary | |
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Seq |
a_info = <Martel.Expression.Seq instance at 0xb71f134c>
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Group |
alignment = <Martel.Expression.Group instance at 0xb71a0...
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Alt |
blast_filter = <Martel.Expression.Alt instance at 0xb71d...
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Group |
blastn = <Martel.Expression.Group instance at 0xb720c56c...
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Seq |
blastn_appheader = <Martel.Expression.Seq instance at 0x...
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Seq |
blastn_ending = <Martel.Expression.Seq instance at 0xb71...
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Seq |
blastn_hsp_header = <Martel.Expression.Seq instance at 0...
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Seq |
blastn_identical = <Martel.Expression.Seq instance at 0x...
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Group |
blastp = <Martel.Expression.Group instance at 0xb71ae2ac...
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Seq |
blastp_appheader = <Martel.Expression.Seq instance at 0x...
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Seq |
blastp_ending = <Martel.Expression.Seq instance at 0xb71...
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Seq |
blastp_hsp_header = <Martel.Expression.Seq instance at 0...
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Seq |
blastp_identical = <Martel.Expression.Seq instance at 0x...
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Group |
blastx = <Martel.Expression.Group instance at 0xb71b9fcc...
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Seq |
blastx_appheader = <Martel.Expression.Seq instance at 0x...
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Seq |
blastx_ending = <Martel.Expression.Seq instance at 0xb71...
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Seq |
blastx_hsp_header = <Martel.Expression.Seq instance at 0...
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Seq |
db_stats = <Martel.Expression.Seq instance at 0xb71a0a6c...
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Group |
expect = <Martel.Expression.Group instance at 0xb7238b4c...
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Group |
format = <Martel.Expression.Group instance at 0xb71fc68c...
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Seq |
frame = <Martel.Expression.Seq instance at 0xb72438ac>
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Seq |
frameshift_info = <Martel.Expression.Seq instance at 0xb...
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Seq |
gap_penalties_stats = <Martel.Expression.Seq instance at...
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Seq |
gapped_lambda_stats = <Martel.Expression.Seq instance at...
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Seq |
generic_info1 = <Martel.Expression.Seq instance at 0xb71...
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Seq |
generic_info2 = <Martel.Expression.Seq instance at 0xb71...
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Group |
header = <Martel.Expression.Group instance at 0xb72385cc...
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Group |
hit = <Martel.Expression.Group instance at 0xb71a07cc>
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Seq |
hit_descr = <Martel.Expression.Seq instance at 0xb7238ac...
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Seq |
hit_length = <Martel.Expression.Seq instance at 0xb72387...
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Seq |
homology_line = <Martel.Expression.Seq instance at 0xb71...
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Group |
hsp = <Martel.Expression.Group instance at 0xb71a078c>
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Seq |
hsp_info = <Martel.Expression.Seq instance at 0xb71eb94c...
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Group |
hsp_length = <Martel.Expression.Group instance at 0xb723...
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Seq |
lambda_stats = <Martel.Expression.Seq instance at 0xb725...
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Seq |
matrix_stats = <Martel.Expression.Seq instance at 0xb725...
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Group |
ncbi_version = <Martel.Expression.Group instance at 0xb7...
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Group |
num_bits = <Martel.Expression.Group instance at 0xb7238b...
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Group |
num_identical = <Martel.Expression.Group instance at 0xb...
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Group |
num_positives = <Martel.Expression.Group instance at 0xb...
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Seq |
query_database = <Martel.Expression.Seq instance at 0xb7...
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Group |
query_descr = <Martel.Expression.Group instance at 0xb71...
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Seq |
query_letters = <Martel.Expression.Seq instance at 0xb71...
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Seq |
query_line = <Martel.Expression.Seq instance at 0xb71a01...
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Seq |
s1_info = <Martel.Expression.Seq instance at 0xb71f6a0c>
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Seq |
s2_info = <Martel.Expression.Seq instance at 0xb71fc0ec>
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Seq |
score = <Martel.Expression.Seq instance at 0xb723e5ac>
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Seq |
spaces_line = <Martel.Expression.Seq instance at 0xb71dd...
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Seq |
strand = <Martel.Expression.Seq instance at 0xb7243dcc>
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Seq |
subject_line = <Martel.Expression.Seq instance at 0xb71a...
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Seq |
t_info = <Martel.Expression.Seq instance at 0xb71ebe8c>
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Group |
table = <Martel.Expression.Group instance at 0xb7231b0c>
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Group |
table_entry = <Martel.Expression.Group instance at 0xb72...
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Group |
tblastn = <Martel.Expression.Group instance at 0xb71c9d0...
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Seq |
tblastn_appheader = <Martel.Expression.Seq instance at 0...
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Seq |
tblastn_ending = <Martel.Expression.Seq instance at 0xb7...
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Seq |
tblastn_hsp_header = <Martel.Expression.Seq instance at ...
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Seq |
tblastn_score = <Martel.Expression.Seq instance at 0xb72...
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Group |
tblastx = <Martel.Expression.Group instance at 0xb7159a4...
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Seq |
tblastx_appheader = <Martel.Expression.Seq instance at 0...
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Seq |
tblastx_ending = <Martel.Expression.Seq instance at 0xb7...
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Seq |
tblastx_frame = <Martel.Expression.Seq instance at 0xb72...
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Seq |
tblastx_hsp_header = <Martel.Expression.Seq instance at ...
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Group |
to_table = <Martel.Expression.Group instance at 0xb72317...
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Seq |
ungapped_lambda_stats = <Martel.Expression.Seq instance ...
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Seq |
x1_info = <Martel.Expression.Seq instance at 0xb71f15ac>
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Seq |
x2_info = <Martel.Expression.Seq instance at 0xb71f1c6c>
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Seq |
x3_info = <Martel.Expression.Seq instance at 0xb71f634c>
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Seq |
_comma_digits = <Martel.Expression.Seq instance at 0xb71...
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Variable Details |
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a_info
|
alignment
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blast_filter
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blastn
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blastn_appheader
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blastn_ending
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blastn_hsp_header
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blastn_identical
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blastp
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blastp_appheader
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blastp_ending
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blastp_hsp_header
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blastp_identical
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blastx
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blastx_appheader
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blastx_ending
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blastx_hsp_header
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db_stats
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expect
|
format
|
frame
|
frameshift_info
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gap_penalties_stats
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gapped_lambda_stats
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generic_info1
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generic_info2
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header
|
hit
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hit_descr
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hit_length
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homology_line
|
hsp
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hsp_info
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hsp_length
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lambda_stats
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matrix_stats
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ncbi_version
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num_bits
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num_identical
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num_positives
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query_database
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query_descr
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query_letters
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query_line
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s1_info
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s2_info
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score
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spaces_line
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strand
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subject_line
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t_info
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table
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table_entry
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tblastn
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tblastn_appheader
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tblastn_ending
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tblastn_hsp_header
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tblastn_score
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tblastx
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tblastx_appheader
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tblastx_ending
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tblastx_frame
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tblastx_hsp_header
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to_table
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ungapped_lambda_stats
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x1_info
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x2_info
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x3_info
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_comma_digits
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