Trees | Index | Help |
---|
Package Bio :: Package Compass :: Class _Consumer |
|
Method Summary | |
---|---|
__init__(self)
| |
hit_alignment(self,
line)
| |
lengths(self,
line)
| |
Ali1: 60456.blo.gz.aln Ali2: allscop//14984.blo.gz.aln... | |
positive_alignment(self,
line)
| |
profilewidth(self,
line)
| |
query_alignment(self,
line)
| |
scores(self,
line)
| |
threshold(self,
line)
|
Class Variable Summary | |
---|---|
SRE_Pattern |
_re_align = ^.{15}(\S+)
|
SRE_Pattern |
_re_lengths = length1=(\S+)\s+filtered_length1=(\S+)\s+l...
|
SRE_Pattern |
_re_names = Ali1:\s+(\S+)\s+Ali2:\s+(\S+)\s+
|
SRE_Pattern |
_re_positive_alignment = ^.{15}(.+)
|
SRE_Pattern |
_re_profilewidth = Nseqs1=(\S+)\s+Neff1=(\S+)\s+Nseqs2=(...
|
SRE_Pattern |
_re_scores = Smith-Waterman score = (\S+)\s+Evalue = (\S...
|
SRE_Pattern |
_re_start = (\d+)
|
SRE_Pattern |
_re_threshold = Threshold of effective gap content in co...
|
Method Details |
---|
names(self, line)Ali1: 60456.blo.gz.aln Ali2: allscop//14984.blo.gz.aln ------query----- -------hit------------- |
Class Variable Details |
---|
_re_align
|
_re_lengths
|
_re_names
|
_re_positive_alignment
|
_re_profilewidth
|
_re_scores
|
_re_start
|
_re_threshold
|
Trees | Index | Help |
---|
Generated by Epydoc 2.1 on Thu Mar 31 20:15:51 2005 | http://epydoc.sf.net |