Package Martel :: Package test :: Package testformats :: Module swissprot38
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Module Martel.test.testformats.swissprot38

Parser for the SWISS-PROT 38 format.

You probably want to use the variables 'record' (for a single record) and 'format' (for a set of records).
Function Summary
  Simple(tag, tag_data)

Variable Summary
Group AC = <Martel.Expression.Group instance at 0xb6e4d80c>
Group AC_block = <Martel.Expression.Group instance at 0xb6e9d9...
Group bogus_DR_group = <Martel.Expression.Group instance at 0x...
Group CC = <Martel.Expression.Group instance at 0xb6ea8cac>
Group CC_begin = <Martel.Expression.Group instance at 0xb6ea8a...
Group CC_copyright = <Martel.Expression.Group instance at 0xb6...
Group CC_copyright_begin = <Martel.Expression.Group instance a...
Group CC_copyright_end = <Martel.Expression.Group instance at ...
Group comment = <Martel.Expression.Group instance at 0xb6eaf52...
Group DE = <Martel.Expression.Group instance at 0xb6e91dcc>
Group DE_block = <Martel.Expression.Group instance at 0xb6ea36...
Group DR = <Martel.Expression.Group instance at 0xb6eafb2c>
Group DR_block = <Martel.Expression.Group instance at 0xb6ebb6...
Seq DR_embl = <Martel.Expression.Seq instance at 0xb6eaf9cc>
Seq DR_general = <Martel.Expression.Seq instance at 0xb6eaf9...
Seq DR_prosite = <Martel.Expression.Seq instance at 0xb6eafa...
Group DT_ann_update = <Martel.Expression.Group instance at 0xb...
Group DT_created = <Martel.Expression.Group instance at 0xb6e4...
Group DT_seq_update = <Martel.Expression.Group instance at 0xb...
Group end = <Martel.Expression.Group instance at 0xb6e51ccc>
Group feature_block = <Martel.Expression.Group instance at 0xb...
ParseRecords format = <Martel.Expression.ParseRecords instance at 0xb...
Group format_expression = <Martel.Expression.Group instance at...
Group FT = <Martel.Expression.Group instance at 0xb6e512ec>
Group FT_continuation = <Martel.Expression.Group instance at 0...
Group FT_range = <Martel.Expression.Group instance at 0xb6ebb8...
Group GN = <Martel.Expression.Group instance at 0xb6ea374c>
Group GN_block = <Martel.Expression.Group instance at 0xb6ea38...
Group ID = <Martel.Expression.Group instance at 0xb6f04e2c>
Group KW = <Martel.Expression.Group instance at 0xb6ebb6cc>
Group KW_block = <Martel.Expression.Group instance at 0xb6ebb7...
Group OC = <Martel.Expression.Group instance at 0xb6ea3c2c>
Group OC_block = <Martel.Expression.Group instance at 0xb6ea3d...
Group OG = <Martel.Expression.Group instance at 0xb6ea3a8c>
Group OG_block = <Martel.Expression.Group instance at 0xb6ea3b...
Group OS = <Martel.Expression.Group instance at 0xb6ea38ec>
Group OS_block = <Martel.Expression.Group instance at 0xb6ea3a...
Group RA = <Martel.Expression.Group instance at 0xb6ea832c>
Group RA_block = <Martel.Expression.Group instance at 0xb6ea86...
Group RC = <Martel.Expression.Group instance at 0xb6ea810c>
Group RC_block = <Martel.Expression.Group instance at 0xb6ea82...
Group record = <Martel.Expression.Group instance at 0xb6e51e6c...
Group reference = <Martel.Expression.Group instance at 0xb6ea8...
Group RL = <Martel.Expression.Group instance at 0xb6ea886c>
Group RL_block = <Martel.Expression.Group instance at 0xb6ea89...
Group RN = <Martel.Expression.Group instance at 0xb6ea3dcc>
Group RP = <Martel.Expression.Group instance at 0xb6ea3fcc>
Group RT = <Martel.Expression.Group instance at 0xb6ea86cc>
Group RT_block = <Martel.Expression.Group instance at 0xb6ea87...
Group RX = <Martel.Expression.Group instance at 0xb6ea82ac>
Group sequence = <Martel.Expression.Group instance at 0xb6e51c...
Group single_comment = <Martel.Expression.Group instance at 0x...
Group SQ = <Martel.Expression.Group instance at 0xb6e513cc>
Group SQ_data = <Martel.Expression.Group instance at 0xb6e5140...

Variable Details

AC

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e4d80c>                       

AC_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e9d9ec>                       

bogus_DR_group

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6eaf4ac>                       

CC

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6ea8cac>                       

CC_begin

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6ea8a8c>                       

CC_copyright

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6eaf10c>                       

CC_copyright_begin

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6ea8f8c>                       

CC_copyright_end

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6eaf34c>                       

comment

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6eaf52c>                       

DE

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e91dcc>                       

DE_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6ea36cc>                       

DR

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6eafb2c>                       

DR_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6ebb64c>                       

DR_embl

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb6eaf9cc>                         

DR_general

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb6eaf9ec>                         

DR_prosite

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0xb6eafa2c>                         

DT_ann_update

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e915cc>                       

DT_created

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e4f90c>                       

DT_seq_update

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e4ff2c>                       

end

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e51ccc>                       

feature_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e5134c>                       

format

Type:
ParseRecords
Value:
<Martel.Expression.ParseRecords instance at 0xb6e51f2c>                

format_expression

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e51eec>                       

FT

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e512ec>                       

FT_continuation

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6ebb90c>                       

FT_range

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6ebb86c>                       

GN

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6ea374c>                       

GN_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6ea386c>                       

ID

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6f04e2c>                       

KW

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6ebb6cc>                       

KW_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6ebb7ec>                       

OC

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6ea3c2c>                       

OC_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6ea3d4c>                       

OG

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6ea3a8c>                       

OG_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6ea3bac>                       

OS

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6ea38ec>                       

OS_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6ea3a0c>                       

RA

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6ea832c>                       

RA_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6ea864c>                       

RC

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6ea810c>                       

RC_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6ea822c>                       

record

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e51e6c>                       

reference

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6ea8a4c>                       

RL

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6ea886c>                       

RL_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6ea898c>                       

RN

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6ea3dcc>                       

RP

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6ea3fcc>                       

RT

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6ea86cc>                       

RT_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6ea87ec>                       

RX

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6ea82ac>                       

sequence

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e51c2c>                       

single_comment

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6ea8f0c>                       

SQ

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e513cc>                       

SQ_data

Type:
Group
Value:
<Martel.Expression.Group instance at 0xb6e5140c>                       

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