cutgextract

 

Function

Extract data from CUTG

Description

**************** EDIT HERE ****************

Usage

Here is a sample session with cutgextract:

% cutgextract

**************** EDIT HERE ****************

Command line arguments

   Standard (Mandatory) qualifiers:
  [-directory]         dirlist    CUTG directory

   Additional (Optional) qualifiers: (none)
   Advanced (Unprompted) qualifiers:
   -wildspec           string     Type of codon file

   Associated qualifiers: (none)
   General qualifiers:
   -auto                boolean    Turn off prompts
   -stdout              boolean    Write standard output
   -filter              boolean    Read standard input, write standard output
   -options             boolean    Prompt for standard and additional values
   -debug               boolean    Write debug output to program.dbg
   -verbose             boolean    Report some/full command line options
   -help                boolean    Report command line options. More
                                  information on associated and general
                                  qualifiers can be found with -help -verbose
   -warning             boolean    Report warnings
   -error               boolean    Report errors
   -fatal               boolean    Report fatal errors
   -die                 boolean    Report deaths


Error: File /packages/emboss_dev/gwilliam/emboss/emboss/emboss/acd/cutgextract.acd line 11: (directory) Unknown attribute 'name'

Input file format

**************** EDIT HERE ****************

Output file format

**************** EDIT HERE ****************

Data files

**************** EDIT HERE ****************

Notes

None.

References

None.

Warnings

None.

Diagnostic Error Messages

None.

Exit status

It always exits with status 0.

Known bugs

None.

See also

Program nameDescription
aaindexextractExtract data from AAINDEX
printsextractExtract data from PRINTS
prosextractBuilds the PROSITE motif database for patmatmotifs to search
rebaseextractExtract data from REBASE
tfextractExtract data from TRANSFAC

Author(s)

Alan Bleasby (ableasby © hgmp.mrc.ac.uk)
HGMP-RC, Genome Campus, Hinxton, Cambridge CB10 1SB, UK

History

Written (date) - author.

Target users

This program is intended to be used by everyone and everything, from naive users to embedded scripts.

Comments