Classes and methods for cDNA microarray data


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Documentation for package `marrayClasses' version 1.2.9

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A C F L M P R S misc

-- A --

as Coerce an object to belong to a given microarray class

-- C --

cbind,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
cbind,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
cbind.marrayNorm Combine marrayRaw, marrayNorm or marrayInfo Objects
cbind.marrayRaw Combine marrayRaw, marrayNorm or marrayInfo Objects
coerce Coerce an object to belong to a given microarray class
coerce,marrayNorm,exprSet-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
coerce,marrayNorm,marraySpots-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
coerce,marrayRaw,exprSet-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
coerce,marrayRaw,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
coerce,marrayRaw,marraySpots-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
coerce-methods Coerce an object to belong to a given microarray class
controlCode Generating a vector recording the control status of the spotted probe sequences.

-- F --

fish.gal Gene expression data from Swirl zebrafish cDNA microarray experiment

-- L --

last.warning Gene expression data from Swirl zebrafish cDNA microarray experiment

-- M --

maA Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maA,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maA,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maA<-,marrayNorm,matrix-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maCompCoord Generate grid and spot matrix coordinates
maCompInd Generate spot indices
maCompPlate Generate plate IDs
maControls Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maControls,marrayLayout-method Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maControls,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maControls,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maControls,marraySpots-method Class "marraySpots", classes and methods for probe sequences spotted on microarrays
maControls,marrayTwo-method Class "marrayTwo", classes and methods for microarray spot statistics
maControls<-,marrayLayout-method Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maControls<-,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maControls<-,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maControls<-,marraySpots-method Class "marraySpots", classes and methods for probe sequences spotted on microarrays
maControls<-,marrayTwo-method Class "marrayTwo", classes and methods for microarray spot statistics
maCoord2Ind Convert grid and spot matrix coordinates to spot indices
maDotsMatch Replace default arguments of a function by user supplied values
maGb Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maGb,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maGb<-,marrayRaw,matrix-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maGb<-,marrayRaw,NULL-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maGenControls Generating a vector recording the control status of the spotted probe sequences.
maGeneTable Table of spot coordinates and gene names
maGf Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maGf,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maGf<-,marrayRaw,matrix-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maGnames Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maGnames,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maGnames,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maGnames,marraySpots-method Class "marraySpots", classes and methods for probe sequences spotted on microarrays
maGnames<-,marrayNorm,marrayInfo-method Class "marrayInfo", description of target samples or spotted probe sequences
maGnames<-,marrayRaw,marrayInfo-method Class "marrayInfo", description of target samples or spotted probe sequences
maGnames<-,marraySpots,marrayInfo-method Class "marrayInfo", description of target samples or spotted probe sequences
maGridCol Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maGridCol,marrayLayout-method Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maGridCol,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maGridCol,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maGridCol,marraySpots-method Class "marraySpots", classes and methods for probe sequences spotted on microarrays
maGridCol,marrayTwo-method Class "marrayTwo", classes and methods for microarray spot statistics
maGridRow Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maGridRow,marrayLayout-method Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maGridRow,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maGridRow,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maGridRow,marraySpots-method Class "marraySpots", classes and methods for probe sequences spotted on microarrays
maGridRow,marrayTwo-method Class "marrayTwo", classes and methods for microarray spot statistics
maInd2Coord Convert spot indices to grid and spot matrix coordinates
maInfo Class "marrayInfo", description of target samples or spotted probe sequences
maInfo,marrayInfo-method Class "marrayInfo", description of target samples or spotted probe sequences
maInfo<-,marrayInfo,data.frame-method Class "marrayInfo", description of target samples or spotted probe sequences
maLabels Class "marrayInfo", description of target samples or spotted probe sequences
maLabels,marrayInfo-method Class "marrayInfo", description of target samples or spotted probe sequences
maLabels<-,marrayInfo,character-method Class "marrayInfo", description of target samples or spotted probe sequences
maLabels<-,marrayInfo,numeric-method Class "marrayInfo", description of target samples or spotted probe sequences
maLayout Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maLayout,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maLayout,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maLayout,marraySpots-method Class "marraySpots", classes and methods for probe sequences spotted on microarrays
maLayout,marrayTwo-method Class "marrayTwo", classes and methods for microarray spot statistics
maLayout<-,marrayNorm,marrayLayout-method Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maLayout<-,marrayRaw,marrayLayout-method Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maLayout<-,marraySpots,marrayLayout-method Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maLayout<-,marrayTwo,marrayLayout-method Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maLG Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maLG,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maLR Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maLR,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maM Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maM,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maM,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maM<-,marrayNorm,matrix-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maMloc Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maMloc,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maMloc<-,marrayNorm,matrix-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maMscale Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maMscale,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maMscale<-,marrayNorm,matrix-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maNgc Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maNgc,marrayLayout-method Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maNgc,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maNgc,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maNgc,marraySpots-method Class "marraySpots", classes and methods for probe sequences spotted on microarrays
maNgc,marrayTwo-method Class "marrayTwo", classes and methods for microarray spot statistics
maNgc<-,marrayLayout,numeric-method Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maNgc<-,marrayNorm,numeric-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maNgc<-,marrayRaw,numeric-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maNgc<-,marraySpots,numeric-method Class "marraySpots", classes and methods for probe sequences spotted on microarrays
maNgc<-,marrayTwo,numeric-method Class "marrayTwo", classes and methods for microarray spot statistics
maNgr Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maNgr,marrayLayout-method Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maNgr,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maNgr,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maNgr,marraySpots-method Class "marraySpots", classes and methods for probe sequences spotted on microarrays
maNgr,marrayTwo-method Class "marrayTwo", classes and methods for microarray spot statistics
maNgr<-,marrayLayout,numeric-method Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maNgr<-,marrayNorm,numeric-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maNgr<-,marrayRaw,numeric-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maNgr<-,marraySpots,numeric-method Class "marraySpots", classes and methods for probe sequences spotted on microarrays
maNgr<-,marrayTwo,numeric-method Class "marrayTwo", classes and methods for microarray spot statistics
maNormCall Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maNormCall,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maNotes Class "marrayInfo", description of target samples or spotted probe sequences
maNotes,marrayInfo-method Class "marrayInfo", description of target samples or spotted probe sequences
maNotes,marrayLayout-method Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maNotes,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maNotes,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maNotes<-,marrayInfo,character-method Class "marrayInfo", description of target samples or spotted probe sequences
maNotes<-,marrayLayout,character-method Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maNotes<-,marrayNorm,character-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maNotes<-,marrayRaw,character-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maNsamples Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maNsamples,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maNsamples,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maNsamples,marrayTwo-method Class "marrayTwo", classes and methods for microarray spot statistics
maNsc Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maNsc,marrayLayout-method Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maNsc,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maNsc,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maNsc,marraySpots-method Class "marraySpots", classes and methods for probe sequences spotted on microarrays
maNsc,marrayTwo-method Class "marrayTwo", classes and methods for microarray spot statistics
maNsc<-,marrayLayout,numeric-method Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maNsc<-,marrayNorm,numeric-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maNsc<-,marrayRaw,numeric-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maNsc<-,marraySpots,numeric-method Class "marraySpots", classes and methods for probe sequences spotted on microarrays
maNsc<-,marrayTwo,numeric-method Class "marrayTwo", classes and methods for microarray spot statistics
maNspots Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maNspots,marrayLayout-method Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maNspots,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maNspots,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maNspots,marraySpots-method Class "marraySpots", classes and methods for probe sequences spotted on microarrays
maNspots,marrayTwo-method Class "marrayTwo", classes and methods for microarray spot statistics
maNspots<-,marrayLayout,numeric-method Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maNspots<-,marrayNorm,numeric-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maNspots<-,marrayRaw,numeric-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maNspots<-,marraySpots,numeric-method Class "marraySpots", classes and methods for probe sequences spotted on microarrays
maNspots<-,marrayTwo,numeric-method Class "marrayTwo", classes and methods for microarray spot statistics
maNsr Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maNsr,marrayLayout-method Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maNsr,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maNsr,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maNsr,marraySpots-method Class "marraySpots", classes and methods for probe sequences spotted on microarrays
maNsr,marrayTwo-method Class "marrayTwo", classes and methods for microarray spot statistics
maNsr<-,marrayLayout,numeric-method Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maNsr<-,marrayNorm,numeric-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maNsr<-,marrayRaw,numeric-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maNsr<-,marraySpots,numeric-method Class "marraySpots", classes and methods for probe sequences spotted on microarrays
maNsr<-,marrayTwo,numeric-method Class "marrayTwo", classes and methods for microarray spot statistics
maNum2Logic Convert a numeric vector of indices to a logical vector
maPlate Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maPlate,marrayLayout-method Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maPlate,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maPlate,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maPlate,marraySpots-method Class "marraySpots", classes and methods for probe sequences spotted on microarrays
maPlate,marrayTwo-method Class "marrayTwo", classes and methods for microarray spot statistics
maPlate<-,marrayLayout-method Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maPlate<-,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maPlate<-,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maPlate<-,marraySpots-method Class "marraySpots", classes and methods for probe sequences spotted on microarrays
maPlate<-,marrayTwo-method Class "marrayTwo", classes and methods for microarray spot statistics
maPrintTip Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maPrintTip,marrayLayout-method Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maPrintTip,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maPrintTip,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maPrintTip,marraySpots-method Class "marraySpots", classes and methods for probe sequences spotted on microarrays
maPrintTip,marrayTwo-method Class "marrayTwo", classes and methods for microarray spot statistics
maRb Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maRb,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maRb<-,marrayRaw,matrix-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maRb<-,marrayRaw,NULL-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maRf Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maRf,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maRf<-,marrayRaw,matrix-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
marrayInfo Class "marrayInfo", description of target samples or spotted probe sequences
marrayInfo-class Class "marrayInfo", description of target samples or spotted probe sequences
marrayLayout Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
marrayLayout-class Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
marrayNorm Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
marrayNorm-class Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
marrayRaw Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
marrayRaw-class Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
marraySpots Class "marraySpots", classes and methods for probe sequences spotted on microarrays
marraySpots-class Class "marraySpots", classes and methods for probe sequences spotted on microarrays
marrayTwo Class "marrayTwo", classes and methods for microarray spot statistics
marrayTwo-class Class "marrayTwo", classes and methods for microarray spot statistics
maSpotCol Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maSpotCol,marrayLayout-method Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maSpotCol,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maSpotCol,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maSpotCol,marraySpots-method Class "marraySpots", classes and methods for probe sequences spotted on microarrays
maSpotCol,marrayTwo-method Class "marrayTwo", classes and methods for microarray spot statistics
maSpotRow Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maSpotRow,marrayLayout-method Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maSpotRow,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maSpotRow,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maSpotRow,marraySpots-method Class "marraySpots", classes and methods for probe sequences spotted on microarrays
maSpotRow,marrayTwo-method Class "marrayTwo", classes and methods for microarray spot statistics
maSub Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maSub,marrayLayout-method Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maSub,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maSub,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maSub,marraySpots-method Class "marraySpots", classes and methods for probe sequences spotted on microarrays
maSub,marrayTwo-method Class "marrayTwo", classes and methods for microarray spot statistics
maSub<-,marrayLayout,logical-method Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maSub<-,marrayLayout,numeric-method Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maSub<-,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maSub<-,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maSub<-,marraySpots-method Class "marraySpots", classes and methods for probe sequences spotted on microarrays
maSub<-,marrayTwo-method Class "marrayTwo", classes and methods for microarray spot statistics
maTargets Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maTargets,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maTargets,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maTargets,marrayTwo-method Class "marrayTwo", classes and methods for microarray spot statistics
maTargets<-,marrayNorm,marrayInfo-method Class "marrayInfo", description of target samples or spotted probe sequences
maTargets<-,marrayRaw,marrayInfo-method Class "marrayInfo", description of target samples or spotted probe sequences
maTargets<-,marrayTwo,marrayInfo-method Class "marrayInfo", description of target samples or spotted probe sequences
maW Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maW,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maW,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maW<-,marrayNorm,matrix-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maW<-,marrayRaw,matrix-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maX Class "marrayTwo", classes and methods for microarray spot statistics
maX,marrayTwo-method Class "marrayTwo", classes and methods for microarray spot statistics
maX<-,marrayTwo,matrix-method Class "marrayTwo", classes and methods for microarray spot statistics
maY Class "marrayTwo", classes and methods for microarray spot statistics
maY,marrayTwo-method Class "marrayTwo", classes and methods for microarray spot statistics
maY<-,marrayTwo,matrix-method Class "marrayTwo", classes and methods for microarray spot statistics

-- P --

print Printing methods for microarray objects
print,marrayInfo-method Class "marrayInfo", description of target samples or spotted probe sequences
print,marrayLayout-method Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
print,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
print,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
print,marraySpots-method Class "marraySpots", classes and methods for probe sequences spotted on microarrays
print,marrayTwo-method Class "marrayTwo", classes and methods for microarray spot statistics
print-methods Printing methods for microarray objects

-- R --

rbind,marrayInfo-method Class "marrayInfo", description of target samples or spotted probe sequences
rbind.marrayInfo Combine marrayRaw, marrayNorm or marrayInfo Objects

-- S --

show,marrayInfo-method Class "marrayInfo", description of target samples or spotted probe sequences
show,marrayLayout-method Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
show,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
show,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
show,marraySpots-method Class "marraySpots", classes and methods for probe sequences spotted on microarrays
show,marrayTwo-method Class "marrayTwo", classes and methods for microarray spot statistics
show-methods Printing methods for microarray objects
swirl Gene expression data from Swirl zebrafish cDNA microarray experiment
swirl.1.spot Gene expression data from Swirl zebrafish cDNA microarray experiment
swirl.2.spot Gene expression data from Swirl zebrafish cDNA microarray experiment
swirl.3.spot Gene expression data from Swirl zebrafish cDNA microarray experiment
swirl.4.spot Gene expression data from Swirl zebrafish cDNA microarray experiment
SwirlSample Gene expression data from Swirl zebrafish cDNA microarray experiment

-- misc --

[ Subsetting methods for microarray objects
[,marrayInfo-method Class "marrayInfo", description of target samples or spotted probe sequences
[,marrayLayout-method Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
[,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
[,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
[,marraySpots-method Class "marraySpots", classes and methods for probe sequences spotted on microarrays
[,marrayTwo-method Class "marrayTwo", classes and methods for microarray spot statistics
[-methods Subsetting methods for microarray objects