abstText |
Class pubMedAbst, a class to handle PubMed abstracts, and methods for processing them. |
abstText,pubMedAbst-method |
Class pubMedAbst, a class to handle PubMed abstracts, and methods for processing them. |
abstUrl |
Class pubMedAbst, a class to handle PubMed abstracts, and methods for processing them. |
abstUrl,pubMedAbst-method |
Class pubMedAbst, a class to handle PubMed abstracts, and methods for processing them. |
accessionToUID |
A function to convert accession values to NCBI UIDs. |
articleTitle |
Class pubMedAbst, a class to handle PubMed abstracts, and methods for processing them. |
articleTitle,pubMedAbst-method |
Class pubMedAbst, a class to handle PubMed abstracts, and methods for processing them. |
authors |
Class pubMedAbst, a class to handle PubMed abstracts, and methods for processing them. |
authors,pubMedAbst-method |
Class pubMedAbst, a class to handle PubMed abstracts, and methods for processing them. |
checkArgs |
A function to locate neighboring genes within a defined range around a target gene represented by a LocusLink id |
chromInfo |
Class chromLocation, a class for describing genes and their chromosome mappings. |
chromInfo,chromLocation-method |
Class chromLocation, a class for describing genes and their chromosome mappings. |
chromLengths |
Class chromLocation, a class for describing genes and their chromosome mappings. |
chromLengths,chromLocation-method |
Class chromLocation, a class for describing genes and their chromosome mappings. |
chromLocation-class |
Class chromLocation, a class for describing genes and their chromosome mappings. |
chromLocs |
Class chromLocation, a class for describing genes and their chromosome mappings. |
chromLocs,chromLocation-method |
Class chromLocation, a class for describing genes and their chromosome mappings. |
chromNames |
Class chromLocation, a class for describing genes and their chromosome mappings. |
chromNames,chromLocation-method |
Class chromLocation, a class for describing genes and their chromosome mappings. |
genbank |
A function to open the browser to Genbank with the selected gene. |
genelocator |
A function to identify genes by their LocusLink (or other id). |
geneSymbols |
Class chromLocation, a class for describing genes and their chromosome mappings. |
geneSymbols,chromLocation-method |
Class chromLocation, a class for describing genes and their chromosome mappings. |
getBoundary |
A function to locate neighboring genes within a defined range around a target gene represented by a LocusLink id |
getGO |
Functions to deal with Data Packages |
getGOdesc |
Functions to deal with Data Packages |
getLL |
Functions to deal with Data Packages |
getPMID |
Functions to deal with Data Packages |
getPMInfo |
extract publication details and abstract from annotate::pubmed function output |
getQuery4LL |
Functions to create hypertext links that can be placed in a table cell of a HTML file |
getQuery4UG |
Functions to create hypertext links that can be placed in a table cell of a HTML file |
getQueryLink |
Functions to create hypertext links that can be placed in a table cell of a HTML file |
getSYMBOL |
Functions to deal with Data Packages |
getTDRows |
Functions to create hypertext links that can be placed in a table cell of a HTML file |
getUniqAnnItem |
Functions to deal with Data Packages |
getValidChr |
A function to locate neighboring genes within a defined range around a target gene represented by a LocusLink id |
hgByChroms |
A dataset to show the human genome base pair locations per chromosome. |
hgCLengths |
A dataset which contains the lengths (in base pairs) of the human chromosomes. |
hgu95Achroloc |
Annotation data for the Affymetrix HGU95A GeneChip |
hgu95Achrom |
Annotation data for the Affymetrix HGU95A GeneChip |
hgu95All |
Annotation data for the Affymetrix HGU95A GeneChip |
hgu95AProbLocs |
chromLocation instance hgu95AProbLocs, an example of a chromLocation object |
hgu95Asym |
Annotation data for the Affymetrix HGU95A GeneChip |
HTMLPage |
Classes to represent HTML pages |
HTMLPage,HTMLPage-method |
Classes to represent HTML pages |
HTMLPage-class |
Classes to represent HTML pages |
pageText |
Classes to represent HTML pages |
pageText,HTMLPage-method |
Classes to represent HTML pages |
pageTitle |
Classes to represent HTML pages |
pageTitle,HTMLPage-method |
Classes to represent HTML pages |
pm.abstGrep |
An interface to grep for PubMed abstracts. |
pm.getabst |
Obtain the abstracts for a set PubMed list. |
pm.titles |
Obtain the titles of the PubMed abstracts. |
pmAbst2HTML |
HTML Generation for PubMed Abstracts |
pmid |
Class pubMedAbst, a class to handle PubMed abstracts, and methods for processing them. |
pmid,pubMedAbst-method |
Class pubMedAbst, a class to handle PubMed abstracts, and methods for processing them. |
pmidQuery |
A function to query PubMed |
probesByLL |
A function that groups probe ids by LocusLink ids |
probesToChrom |
Class chromLocation, a class for describing genes and their chromosome mappings. |
probesToChrom,chromLocation-method |
Class chromLocation, a class for describing genes and their chromosome mappings. |
pubDate |
Class pubMedAbst, a class to handle PubMed abstracts, and methods for processing them. |
pubDate,pubMedAbst-method |
Class pubMedAbst, a class to handle PubMed abstracts, and methods for processing them. |
pubmed |
A function to open the browser to Pubmed with the selected gene. |
pubMedAbst |
Class pubMedAbst, a class to handle PubMed abstracts, and methods for processing them. |
pubMedAbst,pubMedAbst-method |
Class pubMedAbst, a class to handle PubMed abstracts, and methods for processing them. |
pubMedAbst-class |
Class pubMedAbst, a class to handle PubMed abstracts, and methods for processing them. |