Geneplotter: plot microarray data


[Package List] [Top]

Documentation for package `geneplotter' version 1.4.0

User Guides and Package Vignettes

Read overview or browse directory.

Help Pages

alongChrom A function for plotting expression data from an exprset for a given chromosome.
amplicon.plot Create an amplicon plot
buildACMainLabel A function for plotting expression data from an exprset for a given chromosome.
cColor A function for marking specific probes on a cPlot.
colorRamp Extend a color palette to a color ramp
colorRampPalette Extend a color palette to a color ramp
cPlot A plotting function for chromosomes.
cScale A function for mapping chromosome length to a number of points.
cullACXPoints A function for plotting expression data from an exprset for a given chromosome.
dChip.colors A function to get the Red-Blue color scheme used by dChip
defMapFun A function to plot a graph colored by expression data
dispACXaxis A function for plotting expression data from an exprset for a given chromosome.
doACCumPlot A function for plotting expression data from an exprset for a given chromosome.
doACImagePlot A function for plotting expression data from an exprset for a given chromosome.
doACLocalPlot A function for plotting expression data from an exprset for a given chromosome.
doACMatPlot A function for plotting expression data from an exprset for a given chromosome.
emptyACPlot A function for plotting expression data from an exprset for a given chromosome.
eset133a A dataset of class exprSet
fixACPhysPoints A function for plotting expression data from an exprset for a given chromosome.
getACClosestPos A function for plotting expression data from an exprset for a given chromosome.
getACDataEnv A function for plotting expression data from an exprset for a given chromosome.
getACExprs A function for plotting expression data from an exprset for a given chromosome.
getACGeneSyms A function for plotting expression data from an exprset for a given chromosome.
getACPlotLabs A function for plotting expression data from an exprset for a given chromosome.
getACStrandVals A function for plotting expression data from an exprset for a given chromosome.
GetColor A function to get the Red-Blue color scheme used by dChip
getPlotExpressionColors A function to plot a graph colored by expression data
greenred.colors A function to get the Red-Blue color scheme used by dChip
highlightACDups A function for plotting expression data from an exprset for a given chromosome.
identifyLines A function for identifying sample lines on an alongChrom() plot.
limitACXRange A function for plotting expression data from an exprset for a given chromosome.
make.chromOrd Make a chromOrd object
Makesense Produce Smoothed Sense/Anti-sense For All Chromosomes
Makesense,exprSet-method Produce Smoothed Sense/Anti-sense For All Chromosomes
Makesense,matrix-method Produce Smoothed Sense/Anti-sense For All Chromosomes
plotChr Plot Smoothed Sense/Anti-sense of Specified Chromosomes
plotExpressionGraph A function to plot a graph colored by expression data
scaleACData A function for plotting expression data from an exprset for a given chromosome.