hu6800NP {hu6800}R Documentation

An annotation data file for NP in the hu6800 package

Description

This is an R environment (hash table like) object containing key and value pairs for the mappings between probe identifiers (key) and the RefSeq accession for a protein record (value). Keys can be accessed using ls(name of the environment) and values using get(key, name of the environment) or multiget(keys, name of the environment). Values may be vectors of length 1 or greater depending on whether a given probe id can be mapped to only one or more RefSeq accessions for a protein record. NA is used for probe ids that can not be mapped to a RefSeq accession for a protein record at this time.

Details

Mappings were based on data provided by LocusLink

Source data built: LocusLink built: March 4, 2004.ftp://ftp.ncbi.nih.gov/refseq/LocusLink/LL_tmpl.gz. Package built: Thu Mar 4 16:17:43 2004

References

ftp://ftp.ncbi.nih.gov/refseq/LocusLink/LL_tmpl.gz

Examples

        require("annotate") || stop("annotate unavailable")
        xx <- ls(env = hu6800NP)
        if(length(xx) > 0){
                # Using get for value of the first key
                get(xx[1], hu6800NP )
                #Using multiget for a few keys
                if(length(xx) >= 3){
                        multiget(xx[1:3], hu6800NP )
                        #Using lookUp of annotate(> 1.3.4)
                        lookUp(xx[1:3],"hu6800","NP")
                }
        }

[Package hu6800 version 1.5.1 Index]