maDotPlots {marray} | R Documentation |
A dot plot showing the values of replicated control genes
maDotPlots(data, x = list("maA"), id = "ID", pch, col, nrep = 3, ...)
data |
Microarray object of class `"marrayRaw"'. By default, plots are done for the first array in the batch. |
x |
Name of accessor method for the spot statistic to be display. E.g. maM to display log-ratios and maA to display log-intensities |
id |
Integer value specifying the index of the array. |
pch |
point style for different control samples. |
col |
color code for different control samples. |
nrep |
Integer value indicating the minimum number of replicated spots required. |
... |
Optional graphical parameters, see `par'. |
Produce a dot plot showing the values of replicated control genes.
Yee Hwa (Jean) Yang
data(swirl) maControls(swirl) <- maGenControls(maGnames(swirl), id="Name") maDotPlots(swirl[,1])