pamr.geneplot {pamr} | R Documentation |
function to plot genes found by the nearest shrunken centroid classifier
pamr.geneplot(fit, data, threshold)
fit |
The result of a call to pamr.train |
data |
A data object, like that passed to pamr.train |
threshold |
Threshold for selecting which genes to plot |
pamr.geneplot
plots the gene expression from a pamr fit, for genes which survive the "threshold".
The genes are plotted from strongest to weakest.
Trevor Hastie,Robert Tibshirani, Balasubramanian Narasimhan, and Gilbert Chu