maDotPlots {marrayPlots}R Documentation

Produce a dot plot for replicated controls genes

Description

A dot plot showing the values of replicated control genes

Usage

maDotPlots(data, x = list("maA"), id = "ID", pch, col, nrep = 3, ...)

Arguments

data Microarray object of class `"marrayRaw"'. By default, plots are done for the first array in the batch.
x Name of accessor method for the spot statistic to be display. E.g. maM to display log-ratios and maA to display log-intensities
id Integer value specifying the index of the array.
pch point style for different control samples.
col color code for different control samples.
nrep Integer value indicating the minimum number of replicated spots required.
... Optional graphical parameters, see `par'.

Value

Produce a dot plot showing the values of replicated control genes.

Author(s)

Yee Hwa (Jean) Yang

Examples

  data(swirl)
  maControls(swirl) <- maGenControls(maGnames(swirl), id="Name")
  maDotPlots(swirl[,1])

[Package marrayPlots version 1.1.13 Index]