r2cluster {ctc} | R Documentation |
Converting data to Cluster format
r2cluster(data,labels=FALSE,colname="ACC",description=FALSE,file="cluster.txt",dec='.')
file |
the path of the file |
data |
a matrix (or data frame) which provides the data to put into the file |
labels |
a logical value indicating whether we use the frist column as labels (UNIQID column for cluster file) |
colname |
Should be one of: YORF,MCLID,CLID,ACC |
description |
a logical value indicating whether we use the second column as description (NAME column for cluster file) |
dec |
the character used in the file for decimal points |
Cluster is a program made by Michael Eisen that performs hierarchical clustering, K-means and SOM.
Cluster is copyrighted. To get or have information about Cluster: http://rana.lbl.gov/EisenSoftware.htm
Antoine Lucas, http://genopole.toulouse.inra.fr/~lucas/R
# Create data .Random.seed <- c(1, 416884367 ,1051235439) m <- matrix(rep(1,3*24),ncol=3) m[9:16,3] <- 3 ; m[17:24,] <- 3 #create 3 groups m <- m+rnorm(24*3,0,0.5) #add noise m <- floor(10*m)/10 #just one digits r2cluster(m)