bg.correct.LESN |
LESN - Low End Signal is Noise Background corrections |
boxplot,PLMset-method |
Class PLMset |
cdfName,PLMset-method |
Class PLMset |
coefs |
Class PLMset |
coefs,PLMset-method |
Class PLMset |
coefs.const |
Class PLMset |
coefs.const,PLMset-method |
Class PLMset |
coefs.probe |
Class PLMset |
coefs.probe,PLMset-method |
Class PLMset |
coefs<-,PLMset-method |
Class PLMset |
fitPLM |
Fit a Probe Level Model to Affymetrix Genechip Data. |
getCdfInfo,PLMset-method |
Class PLMset |
image,PLMset-method |
Class PLMset |
indexProbes,PLMset,character-method |
Class PLMset |
indexProbesProcessed |
Class PLMset |
indexProbesProcessed,PLMset-method |
Class PLMset |
Mbox |
Class PLMset |
Mbox,PLMset-method |
Class PLMset |
model.description |
Class PLMset |
model.description,PLMset-method |
Class PLMset |
normalize.AffyBatch.quantiles.probeset |
Quantile Normalization applied to probesets |
normalize.AffyBatch.scaling |
Scaling normalization |
normalize.exprSet.contrasts |
Normalization applied to exprSets |
normalize.exprSet.invariantset |
Normalization applied to exprSets |
normalize.exprSet.loess |
Normalization applied to exprSets |
normalize.exprSet.methods |
Normalization applied to exprSets |
normalize.exprSet.qspline |
Normalization applied to exprSets |
normalize.exprSet.quantiles |
Normalization applied to exprSets |
normalize.exprSet.scaling |
Normalization applied to exprSets |
normalize.scaling |
Scaling normalization |
normvec |
Class PLMset |
normvec,PLMset-method |
Class PLMset |
PLMset |
Class PLMset |
PLMset-class |
Class PLMset |
PLMset2exprSet |
Convert a PLMset to an exprSet |
pset2eset |
Convert a PLMset to an exprSet |
pseudoColorBar |
Coloring pseudo chip images |
pseudoPalette |
Coloring pseudo chip images |
resid,PLMset-method |
Class PLMset |
resid<-,PLMset-method |
Class PLMset |
residSE |
Class PLMset |
residSE,PLMset-method |
Class PLMset |
residuals,PLMset-method |
Class PLMset |
residuals<-,PLMset-method |
Class PLMset |
rmaPLM |
Fit a RMA to Affymetrix Genechip Data as a PLMset |
sampleNames<-,PLMset-method |
Class PLMset |
se |
Class PLMset |
se,PLMset-method |
Class PLMset |
se.const |
Class PLMset |
se.const,PLMset-method |
Class PLMset |
se.probe |
Class PLMset |
se.probe,PLMset-method |
Class PLMset |
se<-,PLMset-method |
Class PLMset |
show,PLMset-method |
Class PLMset |
summary,PLMset-method |
Class PLMset |
threestep |
Three Step expression measures |
threestepPLM |
Three Step expression measures returned as a PLMset |
varcov |
Class PLMset |
varcov,PLMset-method |
Class PLMset |
weights,PLMset-method |
Class PLMset |
weights<-,PLMset-method |
Class PLMset |