marraySpots-class {marrayClasses} | R Documentation |
This class stores information on the spotted probe sequences for a batch of arrays.
A batch of arrays consists of a collection of arrays with the same layout ("marrayLayout"
). The class contains slots for the layout of the arrays, and a description of the probe sequences spotted onto the arrays.
Objects can be created by calls of the form
new('marraySpots',
maGnames = ...., # Object of class marrayInfo
maLayout = ...., # Object of class marrayLayout
maGnames
:"marrayInfo"
, description of spotted probe sequences.maLayout
:"marrayLayout"
, layout parameters for the cDNA microarrays.signature(x = "marraySpots")
: subsetting operator for spots on the array, ensures that all slots are subset properly.signature(from = "marrayRaw", to = "marraySpots")
: coerce an object of class "marrayRaw"
into an object of class "marraySpots"
. signature(from = "marrayNorm", to = "marraySpots")
: coerce an object of class "marrayNorm"
into an object of class "marraySpots"
. signature(object = "marraySpots")
: slot accessor method.signature(object = "marraySpots")
: slot assignment method.signature(object = "marraySpots")
: slot accessor method.signature(object = "marraySpots", value = "marrayInfo")
: slot assignment method.signature(object = "marraySpots")
: method which computes a vector of grid column coordinates for each spot.signature(object = "marraySpots")
: method which computes a vector of grid row coordinates for each spot.signature(object = "marraySpots")
: slot accessor method.signature(object = "marraySpots", value = "marrayLayout")
: slot assignment method.signature(object = "marraySpots")
: slot accessor method.signature(object = "marraySpots", value = "numeric")
: slot assignment method.signature(object = "marraySpots")
: slot accessor method.signature(object = "marraySpots", value = "numeric")
: slot assignment method.signature(object = "marraySpots")
: slot accessor method.signature(object = "marraySpots", value = "numeric")
: slot assignment method.signature(object = "marraySpots")
: slot accessor method.signature(object = "marraySpots", value = "numeric")
: slot assignment method.signature(object = "marraySpots")
: slot accessor method.signature(object = "marraySpots", value = "numeric")
: slot assignment method.signature(object = "marraySpots")
: slot accessor method.signature(object = "marraySpots")
: slot assignment method. signature(object = "marraySpots")
: method which computes a vector of print-tip-group indices for each spot.signature(object = "marraySpots")
: method which computes a vector of spot column coordinates for each spot.signature(object = "marraySpots")
: method which computes a vector of spot row coordinates for each spot.signature(object = "marraySpots")
: slot accessor method.signature(object = "marraySpots")
: slot assignment method.signature(x = "marraySpots")
: print method for "marraySpots"
class.Sandrine Dudoit, http://www.stat.berkeley.edu/~sandrine.
S. Dudoit and Y. H. Yang. (2002). Bioconductor R packages for exploratory analysis and normalization of cDNA microarray data. In G. Parmigiani, E. S. Garrett, R. A. Irizarry and S. L. Zeger, editors, The Analysis of Gene Expression Data: Methods and Software, Springer, New York.
marrayLayout
, marrayRaw
, marrayNorm
, marrayInfo
, marrayTwo
, print-methods
, [-methods
.
## See marrayRaw