basecontent {matchprobes} | R Documentation |
This function accepts a character string representing the base sequence of the DNA for a gene and computes the counts of each base.
basecontent(seq)
seq |
Character vector. |
Each element of x
is separately decomposed into its base
sequence components.
A matrix with 4 columns and length(x)
rows.
The columns are names A
, C
, T
,
G
, and the values in each column are the counts
of the corresponding bases in the elements of x
.
The elements of x
can be in upper case, lower case
or mixed.
R. Gentleman, W. Huber
v<-c("AAACT", "GGGTT", "ggAtT") basecontent(v)