maQualityMain {marray}R Documentation

Calculate basic array wide statistics

Description

This is based on GenePix output and it calculates summary statistics of various signal to noise ratios.

Usage

maQualityMain(mraw, path=".", fname, output = FALSE)
maQuality(mraw, path=".")

Arguments

mraw Microarray object of class `"marrayRaw"'. By default, plots are done for the first array in the batch.
path a character string representing the data directory. By default this is set to the current working directory ("."). In the case where "fname" contains the full path name, path should be set to NULL.
fname a vector of character strings representing the name of the output file. This is only used when "output" is TRUE.
output if TRUE, write the results to a file.

Value

Produce a lists of various summary statistics

Author(s)

Jean Yee Hwa yang

See Also

summary, maGenControls

Examples

##   data(swirl)
##   datadir <- system.file("swirldata", package="marray")
##   maControls(swirl) <- maGenControls(maGnames(swirl), id="Name")
##   maQualityMain(swirl[,1], path=datadir)

[Package marray version 1.5.14 Index]