maDefaultPar {marrayPlots} | R Documentation |
This function returns default graphical parameters for microarray objects. The parameters may be passed as arguments to the functions maBoxplot
and maPlot
.
maDefaultPar(m, x, y, z)
m |
Microarray object of class "marrayRaw" , "marrayNorm" , or "marrayTwo" . |
x |
Name of accessor method for the abscissa spot statistic, typically a slot name for the microarray object m , such as maA . |
y |
Name of accessor method for the ordinate spot statistic, typically a slot name for the microarray object m , such as maM . |
z |
Name of accessor method for the spot statistic used to stratify the data, typically a slot name for the microarray layout object (see "marrayLayout" ) such as maPlate or a method such as maPrintTip . |
A list with elements
def.box |
default graphical parameters for maBoxplot . |
def.plot |
default graphical parameters for maPlot . |
def.lines |
default graphical parameters for functions such as maLoessLines used in maPlot . |
def.legend |
default graphical parameters for functions such as maLegendLines used in maPlot . |
def.text |
default graphical parameters for functions such as maText used in maPlot . |
Sandrine Dudoit, http://www.stat.berkeley.edu/~sandrine.
S. Dudoit and Y. H. Yang. (2002). Bioconductor R packages for exploratory analysis and normalization of cDNA microarray data. In G. Parmigiani, E. S. Garrett, R. A. Irizarry and S. L. Zeger, editors, The Analysis of Gene Expression Data: Methods and Software, Springer, New York.
maBoxplot
, maPlot
, maLegendLines
, maLoessLines
, maText
, maDotsDefaults
.
# See examples for maPlot.