read.probematrix {affy} | R Documentation |
Read CEL data into matrices.
read.probematrix(..., filenames = character(0), phenoData = new("phenoData"), description = NULL, notes = "", compress = getOption("BioC")$affy$compress.cel, rm.mask = FALSE, rm.outliers = FALSE, rm.extra = FALSE, verbose = FALSE,which="pm")
... |
file names separated by comma. |
filenames |
file names in a character vector. |
phenoData |
a phenoData object |
description |
a MIAME object |
notes |
notes |
compress |
are the CEL files compressed ? |
rm.mask |
should the spots marked as 'MASKS' set to NA ? |
rm.outliers |
should the spots marked as 'OUTLIERS' set to NA |
rm.extra |
if TRUE , overrides what is in rm.mask and rm.oultiers |
verbose |
verbosity flag |
which |
should be either "pm", "mm" or "both" |
A list of one or two matrices. Each matrix is either PM or MM data. No
AffyBatch
is created.
Ben Bolstad bolstad@stat.berkeley.edu