pamr.geneplot {pamr}R Documentation

A function to plot genes found by the nearest shrunken centroid classifier

Description

function to plot genes found by the nearest shrunken centroid classifier

Usage

pamr.geneplot(fit, data, threshold)

Arguments

fit The result of a call to pamr.train
data A data object, like that passed to pamr.train
threshold Threshold for selecting which genes to plot

Details

pamr.geneplot plots the gene expression from a pamr fit, for genes which survive the "threshold". The genes are plotted from strongest to weakest.

Value

Author(s)

Trevor Hastie,Robert Tibshirani, Balasubramanian Narasimhan, and Gilbert Chu

References


[Package pamr version 1.12.1 Index]