aaMap |
names and characteristics of amino acids |
abstract |
Class MIAME, a class for storing microarray experiment information |
abstract,exprSet-method |
Class MIAME, a class for storing microarray experiment information |
abstract,MIAME-method |
Class MIAME, a class for storing microarray experiment information |
addNonExisting |
Add menu items to an existing/new menu of a window |
addPDF2Vig |
Add menu items to an existing/new menu of a window |
addVig2Menu |
Add menu items to an existing/new menu of a window |
addVig4Unix |
Add menu items to an existing/new menu of a window |
addVig4Win |
Add menu items to an existing/new menu of a window |
addVigs2WinMenu |
Add menu items to an existing/new menu of a window |
aggenv |
Class aggregator, a class of aggregators |
aggenv,aggregator-method |
Class aggregator, a class of aggregators |
aggfun |
Class aggregator, a class of aggregators |
aggfun,aggregator-method |
Class aggregator, a class of aggregators |
Aggregate |
A simple aggregation mechanism. |
aggregator-class |
Class aggregator, a class of aggregators |
annotation |
Class exprSet, a class for microarray data, and methods for processing them |
annotation,exprSet-method |
Class exprSet, a class for microarray data, and methods for processing them |
annotation<-,exprSet-method |
Class exprSet, a class for microarray data, and methods for processing them |
as.data.frame.exprSet |
converts an exprSet to a dataframe |
characterORMIAME |
Class characterORMIAME, a class to make older versions compatible |
characterORMIAME-class |
Class characterORMIAME, a class to make older versions compatible |
combine |
Combine Data into a single object. |
combine,eSet,ANY-method |
Class "eSet": a new exprSet class |
combine,eSet,eSet-method |
Class "eSet": a new exprSet class |
combine,phenoData,ANY-method |
Combine Data into a single object. |
combine,phenoData,phenoData-method |
Combine Data into a single object. |
container-class |
container: a class that specializes the list construct of R to provide content and access control |
content |
container: a class that specializes the list construct of R to provide content and access control |
content,container-method |
container: a class that specializes the list construct of R to provide content and access control |
contents |
Function to retrieve contents of environments |
contents,environment-method |
Function to retrieve contents of environments |
copyEnv |
List-Environment interactions |
copySubstitute |
Copy between connections or from an to files with configure-like name-value substitution |
createPackage |
Create a package directory from a template, with symbol-value substitution |
eList |
Class "eSet": a new exprSet class |
eList,eSet-method |
Class "eSet": a new exprSet class |
eList<-,eSet,environment-method |
Class "eSet": a new exprSet class |
eList<-,eSet,exprList-method |
Class "exprList" a class union of a list and an environment. |
eList<-,eSet,list-method |
Class "eSet": a new exprSet class |
esApply |
Apply for the expression data in an exprSet |
eset |
A dataset of class exprSet |
eSet-class |
Class "eSet": a new exprSet class |
expinfo |
Class MIAME, a class for storing microarray experiment information |
expinfo,MIAME-method |
Class MIAME, a class for storing microarray experiment information |
exprList-class |
Class "exprList" a class union of a list and an environment. |
exprMatrix-class |
Class union for objects behaving like a matrix |
exprs |
Class exprSet, a class for microarray data, and methods for processing them |
exprs,eSet-method |
Class "eSet": a new exprSet class |
exprs,exprSet-method |
Class exprSet, a class for microarray data, and methods for processing them |
exprs2excel |
Class exprSet, a class for microarray data, and methods for processing them |
exprs2excel,exprSet-method |
Class exprSet, a class for microarray data, and methods for processing them |
exprs<-,exprSet-method |
Class exprSet, a class for microarray data, and methods for processing them |
exprSet |
Class exprSet, a class for microarray data, and methods for processing them |
exprSet-class |
Class exprSet, a class for microarray data, and methods for processing them |
geneCov |
A subset of some expression data. |
geneData |
A subset of some expression data. |
geneNames |
Class exprSet, a class for microarray data, and methods for processing them |
geneNames,exprSet-method |
Class exprSet, a class for microarray data, and methods for processing them |
geneNames<-,exprSet-method |
Class exprSet, a class for microarray data, and methods for processing them |
getExpData |
Class "eSet": a new exprSet class |
getExpData,eSet,character-method |
Class "eSet": a new exprSet class |
getPkgVigs |
A function to list PDF files for a package |
initfun |
Class aggregator, a class of aggregators |
initfun,aggregator-method |
Class aggregator, a class of aggregators |
iter |
Methods for the generic iter. |
iter,exprSet,character,function-method |
Methods for the generic iter. |
iter,exprSet,missing,function-method |
Methods for the generic iter. |
iter,exprSet,missing,list-method |
Methods for the generic iter. |
iter-methods |
Methods for the generic iter. |
normControls |
Class MIAME, a class for storing microarray experiment information |
normControls,MIAME-method |
Class MIAME, a class for storing microarray experiment information |
notes |
Class exprSet, a class for microarray data, and methods for processing them |
notes,exprSet-method |
Class exprSet, a class for microarray data, and methods for processing them |
notes<-,exprSet-method |
Class exprSet, a class for microarray data, and methods for processing them |
package.version |
A function to report package versions |
pData |
Class exprSet, a class for microarray data, and methods for processing them |
pData,eSet-method |
Class "eSet": a new exprSet class |
pData,exprSet-method |
Class exprSet, a class for microarray data, and methods for processing them |
pData,phenoData-method |
Class phenoData, a class for patient or experiment level data. |
pData<-,eSet-method |
Class "eSet": a new exprSet class |
pData<-,exprSet-method |
Class exprSet, a class for microarray data, and methods for processing them |
pData<-,phenoData-method |
Class phenoData, a class for patient or experiment level data. |
phenoData |
Class exprSet, a class for microarray data, and methods for processing them |
phenoData,eSet-method |
Class "eSet": a new exprSet class |
phenoData,exprSet-method |
Class exprSet, a class for microarray data, and methods for processing them |
phenoData-class |
Class phenoData, a class for patient or experiment level data. |
phenoData<-,eSet,phenoData-method |
Class "eSet": a new exprSet class |
phenoData<-,exprSet,phenoData-method |
Class exprSet, a class for microarray data, and methods for processing them |
phenoData<-,pheno |
Class phenoData, a class for patient or experiment level data. |
preproc |
Class MIAME, a class for storing microarray experiment information |
preproc,MIAME-method |
Class MIAME, a class for storing microarray experiment information |
sampleNames |
Class exprSet, a class for microarray data, and methods for processing them |
sampleNames,exprSet-method |
Class exprSet, a class for microarray data, and methods for processing them |
sampleNames<-,exprSet-method |
Class exprSet, a class for microarray data, and methods for processing them |
samples |
Class MIAME, a class for storing microarray experiment information |
samples,MIAME-method |
Class MIAME, a class for storing microarray experiment information |
se.exprs |
Class exprSet, a class for microarray data, and methods for processing them |
se.exprs,exprSet-method |
Class exprSet, a class for microarray data, and methods for processing them |
se.exprs<-,exprSet-method |
Class exprSet, a class for microarray data, and methods for processing them |
show,container-method |
container: a class that specializes the list construct of R to provide content and access control |
show,eSet-method |
Class "eSet": a new exprSet class |
show,exprSet-method |
Class exprSet, a class for microarray data, and methods for processing them |
show,MIAME-method |
Class MIAME, a class for storing microarray experiment information |
show,phenoData-method |
Class phenoData, a class for patient or experiment level data. |
split,exprSet,vector-method |
Class exprSet, a class for microarray data, and methods for processing them |
split,phenoData,vector-method |
Class phenoData, a class for patient or experiment level data. |
[,container-method |
container: a class that specializes the list construct of R to provide content and access control |
[,eSet-method |
Class "eSet": a new exprSet class |
[,exprSet-method |
Class exprSet, a class for microarray data, and methods for processing them |
[,phenoData-method |
Class phenoData, a class for patient or experiment level data. |
[[,container-method |
container: a class that specializes the list construct of R to provide content and access control |
[[,exprSet-method |
Class exprSet, a class for microarray data, and methods for processing them |
[[,phenoData-method |
Class phenoData, a class for patient or experiment level data. |
[[<-,container-method |
container: a class that specializes the list construct of R to provide content and access control |
[[<-,exprSet-method |
Class exprSet, a class for microarray data, and methods for processing them |
[[<-,phenoData-method |
Class phenoData, a class for patient or experiment level data. |