write.fit {limma} | R Documentation |
Write a microarray linear model fit a file.
write.fit(fit, results=NULL, FStat=NULL, file, digits=2, adjust="none")
fit |
object of class MArrayLM containing the results of a linear model fit |
results |
object of class TestResults |
FStat |
numeric vector such as FStat(fit) |
file |
character string giving name of file |
digits |
integer indicating precision to be used |
adjust |
character string specifying method to use to adjust the P-values for multiple testing, e.g., "holm" or "fdr". See p.adjust for the available options. If NULL or "none" then the P-values are not adjusted. |
This function writes a tab-delimited text file containing for each gene (1) the average log-intensity, (2) the log-ratios, (3) moderated t-statistics, (4) F-statistic if available, (5) classification if available and (6) gene names and annotation.
No value is produced but a file is written to the current working directory.
Gordon Smyth
write
in the base library.
An overview of linear model functions in limma is given by 5.LinearModels.