aaf.handler |
Handle feching annotation data columns |
aafChromLoc |
Constructor for aafChromLoc objects |
aafChromLoc-class |
Class aafChromLoc, a class for gene chromosome locations |
aafChromosome |
Constructor for aafChromosome objects |
aafChromosome-class |
Class aafChromosome, a class for gene chromosome assignments |
aafCytoband |
Constructor for aafCytoband objects |
aafCytoband-class |
Class aafCytoband, a class for cytoband data |
aafDescription |
Constructor for aafDescription objects |
aafDescription-class |
Class aafDescription, a class for gene descriptions |
aafExpr |
Sample exprSet used for demonstration purposes |
aafFunction |
Constructor for aafFunction objects |
aafFunction-class |
Class aafFunction, a class for gene product functions |
aafGenBank |
Constructor for aafGenBank objects |
aafGenBank-class |
Class aafGenBank, a class for GenBank accession numbers |
aafGO |
Constructor for aafGO objects |
aafGO-class |
Class aafGO, a class for gene ontology ids |
aafGOItem |
Class aafGOItem, a class for gene ontology id elements |
aafGOItem-class |
Class aafGOItem, a class for gene ontology id elements |
aafIntensity |
Class aafIntensity, a class for gene expression values |
aafIntensity-class |
Class aafIntensity, a class for gene expression values |
aafList |
Class aafList, a specialized subclass of list |
aafList-class |
Class aafList, a specialized subclass of list |
aafLocusLink |
Constructor for aafLocusLink objects |
aafLocusLink-class |
Class aafLocusLink, a class for LocusLink ids |
aafPathway |
Constructor for aafPathway objects |
aafPathway-class |
Class aafPathway, a class for KEGG pathway ids |
aafPathwayItem |
Class aafPathwayItem, a class for KEGG pathway id elements |
aafPathwayItem-class |
Class aafPathwayItem, a class for KEGG pathway id elements |
aafProbe |
Constructor for aafProbe objects |
aafProbe-class |
Class aafProbe, a class for Probe ids |
aafPubMed |
Constructor for aafPubMed objects |
aafPubMed-class |
Class aafPubMed, a class for PubMed ids |
aafSearchGO |
Find probe ids corresponding to GO ids |
aafSearchText |
Search metadata annotation text |
aafSigned |
Class aafSigned, a class for signed numerical data |
aafSigned-class |
Class aafSigned, a class for signed numerical data |
aafSymbol |
Constructor for aafSymbol objects |
aafSymbol-class |
Class aafSymbol, a class for gene symbols |
aafTable |
Constructor for aafTable objects |
aafTable-class |
Class aafTable, a tabular microarray data class |
aafTableAnn |
Constructor for aafTable objects from annotation data |
aafTableFrame |
Constructor for aafTable objects from data frames |
aafTableInt |
Constructor for aafTable objects from exprSets |
aafUniGene |
Constructor for aafUniGene objects |
aafUniGene-class |
Class aafUniGene, a class for UniGene cluster ids |
annaffyACCNUM |
Subset of annotation data file for ACCNUM in the hgu95av2 package |
annaffyCHR |
Subset of annotation data file for CHR in the hgu95av2 package |
annaffyCHRLOC |
Subset of annotation data file for CHRLOC in the hgu95av2 package |
annaffyENZYME |
Subset of annotation data file for ENZYME in the hgu95av2 package |
annaffyGENENAME |
Subset of annotation data file for GENENAME in the hgu95av2 package |
annaffyGO |
Subset of annotation data file for GO in the hgu95av2 package |
annaffyLOCUSID |
Subset of annotation data file for LOCUSID in the hgu95av2 package |
annaffyMAP |
Subset of annotation data file for MAP in the hgu95av2 package |
annaffyPATH |
Subset of annotation data file for PATH in the hgu95av2 package |
annaffyPMID |
Subset of annotation data file for PMID in the hgu95av2 package |
annaffySUMFUNC |
Subset of annotation data file for SUMFUNC in the hgu95av2 package |
annaffySYMBOL |
Subset of annotation data file for SYMBOL in the hgu95av2 package |
annaffyUNIGENE |
Subset of annotation data file for UNIGENE in the hgu95av2 package |
getCSS |
Methods for function getCSS |
getCSS,aafGO-method |
Class aafGO, a class for gene ontology ids |
getCSS,aafList-method |
Class aafList, a specialized subclass of list |
getCSS,aafPathway-method |
Class aafPathway, a class for KEGG pathway ids |
getCSS,aafPubMed-method |
Class aafPubMed, a class for PubMed ids |
getCSS,aafSigned-method |
Class aafSigned, a class for signed numerical data |
getCSS,ANY-method |
Methods for function getCSS |
getCSS-methods |
Methods for function getCSS |
getHTML |
Methods for function getHTML |
getHTML,aafGO-method |
Class aafGO, a class for gene ontology ids |
getHTML,aafGOItem-method |
Class aafGOItem, a class for gene ontology id elements |
getHTML,aafList-method |
Class aafList, a specialized subclass of list |
getHTML,aafPathway-method |
Class aafPathway, a class for KEGG pathway ids |
getHTML,aafPathwayItem-method |
Class aafPathwayItem, a class for KEGG pathway id elements |
getHTML,aafPubMed-method |
Class aafPubMed, a class for PubMed ids |
getHTML,ANY-method |
Methods for function getHTML |
getHTML-methods |
Methods for function getHTML |
getTD |
Methods for function getTD |
getTD,aafGO-method |
Class aafGO, a class for gene ontology ids |
getTD,aafIntensity-method |
Class aafIntensity, a class for gene expression values |
getTD,aafList-method |
Class aafList, a specialized subclass of list |
getTD,aafPathway-method |
Class aafPathway, a class for KEGG pathway ids |
getTD,aafPubMed-method |
Class aafPubMed, a class for PubMed ids |
getTD,aafSigned-method |
Class aafSigned, a class for signed numerical data |
getTD,ANY-method |
Methods for function getTD |
getTD-methods |
Methods for function getTD |
getText |
Methods for function getText |
getText,aafCytoband-method |
Class aafCytoband, a class for cytoband data |
getText,aafGO-method |
Class aafGO, a class for gene ontology ids |
getText,aafGOItem-method |
Class aafGOItem, a class for gene ontology id elements |
getText,aafList-method |
Class aafList, a specialized subclass of list |
getText,aafPathway-method |
Class aafPathway, a class for KEGG pathway ids |
getText,aafPathwayItem-method |
Class aafPathwayItem, a class for KEGG pathway id elements |
getText,ANY-method |
Methods for function getText |
getText-methods |
Methods for function getText |
getURL |
Methods for function getURL |
getURL,aafCytoband-method |
Class aafCytoband, a class for cytoband data |
getURL,aafGenBank-method |
Class aafGenBank, a class for GenBank accession numbers |
getURL,aafGO-method |
Class aafGO, a class for gene ontology ids |
getURL,aafGOItem-method |
Class aafGOItem, a class for gene ontology id elements |
getURL,aafList-method |
Class aafList, a specialized subclass of list |
getURL,aafLocusLink-method |
Class aafLocusLink, a class for LocusLink ids |
getURL,aafPathway-method |
Class aafPathway, a class for KEGG pathway ids |
getURL,aafPathwayItem-method |
Class aafPathwayItem, a class for KEGG pathway id elements |
getURL,aafProbe-method |
Class aafProbe, a class for Probe ids |
getURL,aafPubMed-method |
Class aafPubMed, a class for PubMed ids |
getURL,aafUniGene-method |
Class aafUniGene, a class for UniGene cluster ids |
getURL,ANY-method |
Methods for function getURL |
getURL-methods |
Methods for function getURL |