alphabetScore {ShortRead}R Documentation

Efficiently calculate the sum of quality scores across bases

Description

This generic takes a QualityScore object and calculates, for each read, the sum of the encoded nucleotide probabilities.

Usage

alphabetScore(object, ...)

Arguments

object

An object of class QualityScore.

...

Additional arguments, currently unused.

Value

A vector of numeric values of length equal to the length of object.

Author(s)

Martin Morgan <mtmorgan@fhcrc.org>


[Package ShortRead version 1.12.4 Index]