QualityScore {ShortRead} | R Documentation |
Use these functions to construct quality indicators for reads or
alignments. See QualityScore
for details of
object content and methods available for manipulating them.
NumericQuality(quality = numeric(0)) IntegerQuality(quality = integer(0)) MatrixQuality(quality = new("matrix")) FastqQuality(quality, ...) SFastqQuality(quality, ...)
quality |
An object used to initialize the data
structure. Appropriate objects are indicated in the constructors
above for Numeric, Integer, and Matrix qualities. For
|
... |
Additional arguments, currently unused. |
Constructors return objects of the corresponding class derived from
QualityScore
.
Martin Morgan <mtmorgan@fhcrc.org>
QualityScore
, readFastq
,
readAligned
nq <- NumericQuality(rnorm(20)) nq quality(nq) quality(nq[10:1])