Version 4.1.5
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What's new

[07/05/05] Version 4.1.5. New options --draw to draw a model. Also new --prior behaviour: a file containing one prior value per alphabet element is required.

[07/05/05] Version 4.1.3. New options -k, -M, -m, --nbleaves. Please try -h for help.

[03/27/05] Version 4.0.2. Methods "proba" and "proba_c" are modified, please watch the PhasedMarkov documentation. Bug fixed in simul_m (phase inversion).

[03/17/05] Miele V, Bourguignon PY, Robelin D, Nuel G, Richard H. seq++: analyzing biological sequences with a range of Markov-related models. Bioinformatics. 2005 Mar 17

[02/17/05] Version 4.0.0: Mixture Transition Distribution models are available in the library, as the program estim_mtd and the PhasedMTDMarkov and MTDMarkov objects.

[02/02/05] New version 3.1.3, with man pages. No more limitations for SequenceSet in terms of sequences number.

[01/24/05] MTD model development starts with 1.75 (1 +1/2+1/4...) developers.

[01/24/05] Happy new year with version 3.1.2 available. estim_pm: time performance increases up to 40% (nice!) with an increase of 0.5% memory. Be careful: some programs options have slightly been modified.

[12/14/04] Stable version 3.1 available. Parcimonious Markov: note a new Partition possibility where you can define a restricted alphabet of synonymous tokens for the markovian predictor -> usefull for proteins.

[11/29/04] Stable version 3.1 is currently tested by 5 beta-testers, fixing a few bugs appearing in versions 3.0.x. Updated version 3.0.4 is also available. Improvments: libxml2 automatically linked, option -v available, bug fixed in simul_m and highly tested.

[11/17/04] Little bug fixed for the help -h command (thanks to Bug and Feedback).

[11/16/04] Release seq++-3.0.3 with enriched documentation on the Partition object and on the programs options. Also successfully compiled on gcc 3.3.4.

[11/15/04] Bug fixed in simul_m (thanks to Bug and Feedback).

[11/15/04] New possibility to declare the alphabet not in a file but within the command line (see program_name --help).

[11/10/04] Release seq++-3.0.2 with improvments on configure and installation steps, supplementary options for the programs

[11/02/04] Release seq++-3.0.1 with updated BIC calculus

[10/20/04] Brand new release seq++-3.0

[10/20/04] Brand new web site using Doxygen

[before 10/20/04] seq++, available since March 2003, in successive versions seq++-1.x.x



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