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itkMedialNodePairCorrespondenceProcess.h

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00001 /*=========================================================================
00002 
00003   Program:   Insight Segmentation & Registration Toolkit
00004   Module:    $RCSfile: itkMedialNodePairCorrespondenceProcess.h,v $
00005   Language:  C++
00006   Date:      $Date: 2003/09/10 14:28:35 $
00007   Version:   $Revision: 1.3 $
00008 
00009   Copyright (c) Insight Software Consortium. All rights reserved.
00010   See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details.
00011 
00012      This software is distributed WITHOUT ANY WARRANTY; without even 
00013      the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
00014      PURPOSE.  See the above copyright notices for more information.
00015 
00016 =========================================================================*/
00017 #ifndef __itkMedialNodePairCorrespondenceProcess_h
00018 #define __itkMedialNodePairCorrespondenceProcess_h
00019 
00020 #include "itkImage.h"
00021 #include "itkProcessObject.h"
00022 #include "itkDataObject.h"
00023 #include "itkBloxCoreAtomImage.h"
00024 #include "itkBloxCoreAtomPixel.h"
00025 #include "itkMatrixResizeableDataObject.h"
00026 #include "itkBinaryMedialNodeMetric.h"
00027 
00028 #include "itkPNGImageIO.h"
00029 #include "itkImageFileWriter.h"
00030 #include "itkRawImageIO.h"
00031 
00032 #include "itkCorrespondenceDataStructure.h"
00033 #include "itkSecondaryNodeList.h"
00034 #include "itkCorrespondingList.h"
00035 #include "itkCorrespondingMedialNodeClique.h"
00036 #include "itkCorrespondenceDataStructureIterator.h"
00037 
00038 namespace itk
00039 {
00040   
00049 template< typename TSourceImage >
00050 class MedialNodePairCorrespondenceProcess : public ProcessObject
00051 {
00052 public:
00054   itkStaticConstMacro(NDimensions, unsigned int, TSourceImage::ImageDimension);
00055 
00057   typedef MedialNodePairCorrespondenceProcess  Self;
00058   typedef ProcessObject  Superclass;
00059   typedef SmartPointer<Self>  Pointer;
00060   typedef SmartPointer<const Self>  ConstPointer;
00061 
00063   typedef DataObject::Pointer DataObjectPointer;
00064 
00066   itkNewMacro(Self);
00067 
00069   itkTypeMacro(MedialNodePairCorrespondenceProcess, ProcessObject);
00070 
00072   typedef TSourceImage CoreAtomImageType;
00073   typedef typename CoreAtomImageType::Pointer CoreAtomImagePointer;
00074   typedef typename CoreAtomImageType::RegionType CoreAtomImageRegionType; 
00075   typedef typename CoreAtomImageType::PixelType CoreAtomImagePixelType; 
00076   typedef typename CoreAtomImageType::ConstPointer CoreAtomImageConstPointer;
00077 
00079   typedef MatrixResizeableDataObject<double> DistanceMatrixType;
00080   typedef typename DistanceMatrixType::Pointer DistanceMatrixPointer;
00081 
00083   typedef MatrixResizeableDataObject<double> CorrespondenceMatrixType;
00084   typedef typename CorrespondenceMatrixType::Pointer CorrespondenceMatrixPointer;
00085 
00087   typedef CorrespondingMedialNodeClique<itkGetStaticConstMacro(NDimensions),2> NodeType;
00088   typedef CorrespondenceDataStructure<NodeType,2> DataStructureType;
00089   typedef typename CorrespondenceDataStructure<NodeType,2>::Pointer DataStructurePointerType;
00090   typedef CorrespondenceDataStructureIterator<DataStructureType> IteratorType;
00091 
00093   typedef BinaryMedialNodeMetric<itkGetStaticConstMacro(NDimensions)> BinaryMetricType;
00094   typedef typename BinaryMedialNodeMetric<itkGetStaticConstMacro(NDimensions)>::Pointer BinaryMetricPointer;
00095 
00097   typedef BloxCoreAtomPixel<itkGetStaticConstMacro(NDimensions)> MedialNodeType;
00098 
00100   typedef Point<double, itkGetStaticConstMacro(NDimensions)> PositionType;
00101 
00103   DataStructureType * GetOutput(void);
00104   DataStructureType * GetOutput(unsigned int idx);
00105 
00106   /* This is important to note...the inputs for this process are somewhat 
00107      complicated, and there are a lot of them.  You need all 5 inputs for 
00108      this process to perform its task */
00109 
00111   void SetCoreAtomImageA( const CoreAtomImageType * CoreAtomImageA );
00112 
00114   void SetCoreAtomImageB( const CoreAtomImageType * CoreAtomImageB );
00115 
00117   void SetDistanceMatrixA( const DistanceMatrixType * DistanceMatrixA );
00118 
00120   void SetDistanceMatrixB( const DistanceMatrixType * DistanceMatrixB );
00121 
00123   int GetNumberOfNodePairs() {return m_NumberOfNodePairs;}  
00124 
00126   int GetNumberOfNodeBasePairs() {return m_NumberOfNodeBasePairs;}  
00127 
00129   void SetCorrespondenceMatrix( const CorrespondenceMatrixType * CorrespondenceMatrix );
00130 
00131   virtual void Update() {this->GenerateData();}
00132 
00133   virtual DataObjectPointer MakeOutput(unsigned int idx);
00134 
00135 protected:
00136   MedialNodePairCorrespondenceProcess();
00137   virtual ~MedialNodePairCorrespondenceProcess(){} 
00138 
00139   void PrintSelf(std::ostream& os, Indent indent) const;
00140 
00142   void GenerateData();
00143 
00145   TSourceImage * GetCoreAtomImageA();
00146   TSourceImage * GetCoreAtomImageB();
00147 
00149   DistanceMatrixType * GetDistanceMatrixA();
00150   DistanceMatrixType * GetDistanceMatrixB();
00151 
00153   CorrespondenceMatrixType * GetCorrespondenceMatrix();
00154 
00155 private:
00156   MedialNodePairCorrespondenceProcess(const Self&); //purposely not implemented
00157   void operator=(const Self&); //purposely not implemented
00158 
00159   CoreAtomImagePointer m_CoreAtomImageA;
00160   CoreAtomImagePointer m_CoreAtomImageB;
00161 
00162   DistanceMatrixPointer m_DistanceMatrixA;
00163   DistanceMatrixPointer m_DistanceMatrixB;
00164 
00165   CorrespondenceMatrixPointer m_CorrespondenceMatrix;
00166 
00167   DataStructurePointerType m_DataStructure;
00168 
00169   BinaryMetricPointer m_BinaryMetric;
00170 
00171   int m_Rows;
00172   int m_Columns;
00173 
00174   int m_NumberOfNodePairs;
00175   int m_NumberOfNodeBasePairs;
00176 
00178   bool m_OutputPNG;
00179 
00183   bool m_CreateOutputFile;
00184 };
00185 
00186 } // end namespace itk
00187 
00188 #ifndef ITK_MANUAL_INSTANTIATION
00189 #include "itkMedialNodePairCorrespondenceProcess.txx"
00190 #endif
00191 
00192 #endif

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