Package Bio :: Package dbdefs :: Module fasta
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Module Bio.dbdefs.fasta

Database definitions for retrieval of FASTA formatted sequences.
Variable Summary
Seq diagnostic_error_expr = <Martel.Expression.Seq instance ...
Str error_expr = <Martel.Expression.Str instance at 0x40e331...
DBGroup fasta = <Bio.config.DBRegistry.DBGroup instance at 0x40e...
EUtilsDB fasta_sequence_eutils = <Bio.config.DBRegistry.EUtilsDB ...
list ncbi_failures = [(<Martel.Expression.Seq instance at 0x4...
Seq proxy_error_expr = <Martel.Expression.Seq instance at 0x...

Variable Details

diagnostic_error_expr

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40e331ac>                         

error_expr

Type:
Str
Value:
<Martel.Expression.Str instance at 0x40e331cc>                         

fasta

Type:
DBGroup
Value:
<Bio.config.DBRegistry.DBGroup instance at 0x40e3328c>                 

fasta_sequence_eutils

Type:
EUtilsDB
Value:
<Bio.config.DBRegistry.EUtilsDB instance at 0x40e3322c>                

ncbi_failures

Type:
list
Value:
[(<Martel.Expression.Seq instance at 0x40e330ac>, 'proxy error'),
 (<Martel.Expression.Seq instance at 0x40e331ac>, 'diagnostic error'),
 (<Martel.Expression.Str instance at 0x40e331cc>, 'ERROR'),
 (<Martel.Expression.Seq instance at 0x40eaa48c>,
  "I got HTML and shouldn't have"),
 (<Martel.Expression.Str instance at 0x40e331ec>, 'Please try again la\
ter'),
 (<Martel.Expression.Str instance at 0x40e3320c>, 'Sequence withdrawn'\
...                                                                    

proxy_error_expr

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x40e330ac>                         

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