Package Martel :: Package test :: Package testformats :: Module swissprot38
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Module Martel.test.testformats.swissprot38

Parser for the SWISS-PROT 38 format.

You probably want to use the variables 'record' (for a single record) and 'format' (for a set of records).
Function Summary
  Simple(tag, tag_data)

Variable Summary
Group AC = <Martel.Expression.Group instance at 0x411fd64c>
Group AC_block = <Martel.Expression.Group instance at 0x411cb7...
Group bogus_DR_group = <Martel.Expression.Group instance at 0x...
Group CC = <Martel.Expression.Group instance at 0x411d69ec>
Group CC_begin = <Martel.Expression.Group instance at 0x411d67...
Group CC_copyright = <Martel.Expression.Group instance at 0x41...
Group CC_copyright_begin = <Martel.Expression.Group instance a...
Group CC_copyright_end = <Martel.Expression.Group instance at ...
Group comment = <Martel.Expression.Group instance at 0x411e126...
Group DE = <Martel.Expression.Group instance at 0x411c8b0c>
Group DE_block = <Martel.Expression.Group instance at 0x411ca4...
Group DR = <Martel.Expression.Group instance at 0x411e186c>
Group DR_block = <Martel.Expression.Group instance at 0x411ec3...
Seq DR_embl = <Martel.Expression.Seq instance at 0x411e170c>
Seq DR_general = <Martel.Expression.Seq instance at 0x411e17...
Seq DR_prosite = <Martel.Expression.Seq instance at 0x411e17...
Group DT_ann_update = <Martel.Expression.Group instance at 0x4...
Group DT_created = <Martel.Expression.Group instance at 0x411e...
Group DT_seq_update = <Martel.Expression.Group instance at 0x4...
Group end = <Martel.Expression.Group instance at 0x41202a0c>
Group feature_block = <Martel.Expression.Group instance at 0x4...
ParseRecords format = <Martel.Expression.ParseRecords instance at 0x4...
Group format_expression = <Martel.Expression.Group instance at...
Group FT = <Martel.Expression.Group instance at 0x4120202c>
Group FT_continuation = <Martel.Expression.Group instance at 0...
Group FT_range = <Martel.Expression.Group instance at 0x411ec5...
Group GN = <Martel.Expression.Group instance at 0x411ca48c>
Group GN_block = <Martel.Expression.Group instance at 0x411ca5...
Group ID = <Martel.Expression.Group instance at 0x411b334c>
Group KW = <Martel.Expression.Group instance at 0x411ec40c>
Group KW_block = <Martel.Expression.Group instance at 0x411ec5...
Group OC = <Martel.Expression.Group instance at 0x411ca96c>
Group OC_block = <Martel.Expression.Group instance at 0x411caa...
Group OG = <Martel.Expression.Group instance at 0x411ca7cc>
Group OG_block = <Martel.Expression.Group instance at 0x411ca8...
Group OS = <Martel.Expression.Group instance at 0x411ca62c>
Group OS_block = <Martel.Expression.Group instance at 0x411ca7...
Group RA = <Martel.Expression.Group instance at 0x411d606c>
Group RA_block = <Martel.Expression.Group instance at 0x411d63...
Group RC = <Martel.Expression.Group instance at 0x411cae2c>
Group RC_block = <Martel.Expression.Group instance at 0x411caf...
Group record = <Martel.Expression.Group instance at 0x41202bac...
Group reference = <Martel.Expression.Group instance at 0x411d6...
Group RL = <Martel.Expression.Group instance at 0x411d65ac>
Group RL_block = <Martel.Expression.Group instance at 0x411d66...
Group RN = <Martel.Expression.Group instance at 0x411cab0c>
Group RP = <Martel.Expression.Group instance at 0x411cacec>
Group RT = <Martel.Expression.Group instance at 0x411d640c>
Group RT_block = <Martel.Expression.Group instance at 0x411d65...
Group RX = <Martel.Expression.Group instance at 0x411cafcc>
Group sequence = <Martel.Expression.Group instance at 0x412029...
Group single_comment = <Martel.Expression.Group instance at 0x...
Group SQ = <Martel.Expression.Group instance at 0x4120210c>
Group SQ_data = <Martel.Expression.Group instance at 0x4120214...

Variable Details

AC

Type:
Group
Value:
<Martel.Expression.Group instance at 0x411fd64c>                       

AC_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0x411cb72c>                       

bogus_DR_group

Type:
Group
Value:
<Martel.Expression.Group instance at 0x411e11ec>                       

CC

Type:
Group
Value:
<Martel.Expression.Group instance at 0x411d69ec>                       

CC_begin

Type:
Group
Value:
<Martel.Expression.Group instance at 0x411d67cc>                       

CC_copyright

Type:
Group
Value:
<Martel.Expression.Group instance at 0x411d6e4c>                       

CC_copyright_begin

Type:
Group
Value:
<Martel.Expression.Group instance at 0x411d6ccc>                       

CC_copyright_end

Type:
Group
Value:
<Martel.Expression.Group instance at 0x411e108c>                       

comment

Type:
Group
Value:
<Martel.Expression.Group instance at 0x411e126c>                       

DE

Type:
Group
Value:
<Martel.Expression.Group instance at 0x411c8b0c>                       

DE_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0x411ca40c>                       

DR

Type:
Group
Value:
<Martel.Expression.Group instance at 0x411e186c>                       

DR_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0x411ec38c>                       

DR_embl

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x411e170c>                         

DR_general

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x411e172c>                         

DR_prosite

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x411e176c>                         

DT_ann_update

Type:
Group
Value:
<Martel.Expression.Group instance at 0x411c830c>                       

DT_created

Type:
Group
Value:
<Martel.Expression.Group instance at 0x411e852c>                       

DT_seq_update

Type:
Group
Value:
<Martel.Expression.Group instance at 0x411e8c6c>                       

end

Type:
Group
Value:
<Martel.Expression.Group instance at 0x41202a0c>                       

feature_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0x4120208c>                       

format

Type:
ParseRecords
Value:
<Martel.Expression.ParseRecords instance at 0x41202c6c>                

format_expression

Type:
Group
Value:
<Martel.Expression.Group instance at 0x41202c2c>                       

FT

Type:
Group
Value:
<Martel.Expression.Group instance at 0x4120202c>                       

FT_continuation

Type:
Group
Value:
<Martel.Expression.Group instance at 0x411ec64c>                       

FT_range

Type:
Group
Value:
<Martel.Expression.Group instance at 0x411ec5ac>                       

GN

Type:
Group
Value:
<Martel.Expression.Group instance at 0x411ca48c>                       

GN_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0x411ca5ac>                       

ID

Type:
Group
Value:
<Martel.Expression.Group instance at 0x411b334c>                       

KW

Type:
Group
Value:
<Martel.Expression.Group instance at 0x411ec40c>                       

KW_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0x411ec52c>                       

OC

Type:
Group
Value:
<Martel.Expression.Group instance at 0x411ca96c>                       

OC_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0x411caa8c>                       

OG

Type:
Group
Value:
<Martel.Expression.Group instance at 0x411ca7cc>                       

OG_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0x411ca8ec>                       

OS

Type:
Group
Value:
<Martel.Expression.Group instance at 0x411ca62c>                       

OS_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0x411ca74c>                       

RA

Type:
Group
Value:
<Martel.Expression.Group instance at 0x411d606c>                       

RA_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0x411d638c>                       

RC

Type:
Group
Value:
<Martel.Expression.Group instance at 0x411cae2c>                       

RC_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0x411caf4c>                       

record

Type:
Group
Value:
<Martel.Expression.Group instance at 0x41202bac>                       

reference

Type:
Group
Value:
<Martel.Expression.Group instance at 0x411d678c>                       

RL

Type:
Group
Value:
<Martel.Expression.Group instance at 0x411d65ac>                       

RL_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0x411d66cc>                       

RN

Type:
Group
Value:
<Martel.Expression.Group instance at 0x411cab0c>                       

RP

Type:
Group
Value:
<Martel.Expression.Group instance at 0x411cacec>                       

RT

Type:
Group
Value:
<Martel.Expression.Group instance at 0x411d640c>                       

RT_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0x411d652c>                       

RX

Type:
Group
Value:
<Martel.Expression.Group instance at 0x411cafcc>                       

sequence

Type:
Group
Value:
<Martel.Expression.Group instance at 0x4120296c>                       

single_comment

Type:
Group
Value:
<Martel.Expression.Group instance at 0x411d6c4c>                       

SQ

Type:
Group
Value:
<Martel.Expression.Group instance at 0x4120210c>                       

SQ_data

Type:
Group
Value:
<Martel.Expression.Group instance at 0x4120214c>                       

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