class PhosphorusPolymer extends BioPolymer
bioPolymerIndexInModel, bsSelectedMonomers, controlPoints, hasWingPoints, haveParameters, invalidControl, leadAtomIndices, leadMidpoints, leadPoints, model, monomerCount, monomers, reversed, sheetSmoothing, twistedSheets, type, TYPE_AMINO, TYPE_CARBOHYDRATE, TYPE_NOBONDING, TYPE_NUCLEIC, wingVectors
Constructor and Description |
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PhosphorusPolymer(Monomer[] monomers) |
Modifier and Type | Method and Description |
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void |
getPdbData(Viewer viewer,
char ctype,
char qtype,
int mStep,
int derivType,
BS bsAtoms,
BS bsSelected,
boolean bothEnds,
boolean isDraw,
boolean addHeader,
LabelToken[] tokens,
javajs.util.OC pdbATOM,
javajs.util.SB pdbCONECT,
BS bsWritten) |
calcEtaThetaAngles, calcParameters, calcPhiPsiAngles, calcRasmolHydrogenBonds, calcSelectedMonomersCount, calculateRamachandranHelixAngle, calculateStruts, clearStructures, findNearestAtomIndex, getConformation, getControlPoint, getControlPoints, getGroups, getIndex, getLeadAtomIndices, getLeadMidPoint, getLeadMidpoints, getLeadPoint, getLeadPoints, getPdbData, getPolymerInfo, getPolymerPointsAndVectors, getPolymerSequenceAtoms, getProteinStructure, getRange, getRangeGroups, getSelectedMonomerCount, getSequence, getType, getWingPoint, getWingVectors, isDna, isMonomerSelected, isRna, recalculateLeadMidpointsAndWingVectors, removeProteinStructure, resetHydrogenPoints, setConformation, setStructureList
PhosphorusPolymer(Monomer[] monomers)
public void getPdbData(Viewer viewer, char ctype, char qtype, int mStep, int derivType, BS bsAtoms, BS bsSelected, boolean bothEnds, boolean isDraw, boolean addHeader, LabelToken[] tokens, javajs.util.OC pdbATOM, javajs.util.SB pdbCONECT, BS bsWritten)
getPdbData
in class BioPolymer