public interface JmolBioResolver
Modifier and Type | Method and Description |
---|---|
void |
addImplicitHydrogenAtoms(JmolAdapter adapter,
int i,
int nH) |
Group |
distinguishAndPropagateGroup(Chain chain,
String group3,
int seqcode,
int firstAtomIndex,
int maxAtomIndex,
int modelIndex,
int[] specialAtomIndexes,
Atom[] atoms) |
void |
finalizeHydrogens() |
String |
fixPropertyValue(BS bsAtoms,
String data) |
Model |
getBioModel(int modelIndex,
int trajectoryBaseIndex,
String jmolData,
Properties modelProperties,
Map<String,Object> modelAuxiliaryInfo) |
void |
initialize(ModelLoader modelLoader) |
void |
initializeHydrogenAddition() |
void |
iterateOverAllNewStructures(JmolAdapter adapter,
Object atomSetCollection) |
void |
setHaveHsAlready(boolean b) |
Group distinguishAndPropagateGroup(Chain chain, String group3, int seqcode, int firstAtomIndex, int maxAtomIndex, int modelIndex, int[] specialAtomIndexes, Atom[] atoms)
void initializeHydrogenAddition()
void finalizeHydrogens()
void setHaveHsAlready(boolean b)
void addImplicitHydrogenAtoms(JmolAdapter adapter, int i, int nH)
void initialize(ModelLoader modelLoader)
Model getBioModel(int modelIndex, int trajectoryBaseIndex, String jmolData, Properties modelProperties, Map<String,Object> modelAuxiliaryInfo)
void iterateOverAllNewStructures(JmolAdapter adapter, Object atomSetCollection)